BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490751
Length=2370
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39690.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3184 0.0
> AT4G39690.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial
inner membrane protein Mitofilin (InterPro:IPR019133);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:18417656-18421971 FORWARD LENGTH=2390
Length=2390
Score = 3184 bits (1724), Expect = 0.0
Identities = 2019/2155 (94%), Gaps = 45/2155 (2%)
Strand=Plus/Plus
Query 1 TTTTGCTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCGTTAACATTTGTTCGCTCTATC 60
|||| |||||||||||||||||||||||||||||||||| ||||| | |||||||| ||
Sbjct 7 TTTTACTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCG-TAACA--TCTTCGCTCTCTC 63
Query 61 GTTCGGCGTTTTCT-TCACGAGAGGA-GCAACGCGATAATGCTTCGGAAGTCGGTTCTCG 118
|||||||| ||| | |||| ||| || || ||||||||||||||||||||||||||||||
Sbjct 64 GTTCGGCG-TTTGTATCACCAGA-GACGCGACGCGATAATGCTTCGGAAGTCGGTTCTCG 121
Query 119 AGCTGTCTTCGCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCTGTCTTCTCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 181
Query 179 ATTTGAGTTCTTCGAGAAATGCATCTACATCTGGTAAGAATGGTCTTCCTGGAGCTAAAC 238
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 182 ATTTGAGCTCTTCGAGAAATGCATCTACATCTGGTAAAAATGGTCTCCCTGGAGCTAAAC 241
Query 239 CCGTTGGGAAACCAGATGCCTCAAAGGTTGATCCTCCAAAAGTGACTTCTCCTCCACCTC 298
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 242 CCGTTGGGAAACCAGATGCCTCAAAAGTTGATCCTCCAAAAGTGA---CTCCT---CCTC 295
Query 299 CTGTGGGGAAACCAAGTGAATCTAAAGGAAATTCTTCAAAAGTGGTTGTAGGAGGTCTTG 358
| | || | | |||||||||||||||||||||||||| |||||||| |||
Sbjct 296 C--T-------CC---T--A-CTAAAGGAAATTCTTCAAAAGTGGTTATAGGAGGTGTTG 340
Query 359 CGATCGCTGGTGCTTTTCTGGTTGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 418
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 341 CAATCGCTGGGGCTTTTCTGGTAGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 400
Query 419 AAGAACAGCAGAAATTAAGCGAGCGAATTCATTCTGATGCTGTTACTAACAAAG-TGGAG 477
||||||||||||||||||| ||||||||||||||||||||| | ||| | |||| |||||
Sbjct 401 AAGAACAGCAGAAATTAAGTGAGCGAATTCATTCTGATGCTCTAACTGA-AAAGCTGGAG 459
Query 478 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAGGATGGTCAA 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 460 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAAGATGGAAAA 519
Query 538 GTTGAAACGCAACCTGAAGTTACTCATTCTGAAGCTTCTGGGGGAATGCAGAGTGACATA 597
||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 520 GTTGAAACGCAACCTCAAGTTACTCATTCTGAAGCTTCCGAGGGAGTGCAGAGTGACATA 579
Query 598 GAAGTGCAACCCGAGTCTGATCTATCATCTGAACGTTTTACATATATTTCTTCGAACCAA 657
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 580 GAACTGCAACCCGAGTCTGATCTATCATCTGACCGTTTTACATATATTTCTTCTAACCAA 639
Query 658 GAGGAGACCACACCTCAAGAAAGTGTCATTGATAGAGCAGAGAGAAACTTGCCTATTTCT 717
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 640 GAGGAG---ACACCTCAAGAAACTGTCATTGATAGAGCAGAGATAAACTTGCCTATTTCT 696
Query 718 GAATCTGAAGATTCGGGAGTTAAGTCGGACATGCCCTCAGAAATTATTTCTGAGGCAGAA 777
| |||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 697 GCATCTGAAGATTCAGGAGCTAAGCCGGACATGCCATCAGAAATTATTTCTGAGGCAGAA 756
Query 778 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGACAGT--T-CTATTGTTAGTGCCCAG 834
||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||
Sbjct 757 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGATAGTCCTATTATTGTTAATGCCCAG 816
Query 835 TCTAGTTCGGCTCATAGAGAAAGTGAAACGGAATCTGCTACACCAAAGGATCCTTCCGCT 894
|||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct 817 TCTAGTTCGGTTCATAGAGAAAGCGAAACGGAATCTGCTTCACCAAAGGATCCTGCCGCT 876
Query 895 GAAAAGGCACATGAGGATGGCATTGAGCGGGAAGTACAAATACCAGGTTCTCTCCTTAAG 954
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 877 CTAAAGACACCTGAGGATGGCATTGAGCGGGAAGTACAATTACCAGGTTCTCTCCTTAAG 936
Query 955 GAATACAATCTAGAAGGCAGTGATACTGAAAGCACTGGATCCCCGTCAATAGGGGAGCAA 1014
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 937 GAATATAATCTAGAAGGCAGTGATACTGAAAGCACTGGGTCCTCGTCAATAGGGGAGCAA 996
Query 1015 CTGACTAAAGAAACTGAGG-CTCTTCCTAACTCAACCGAGGGGCTGAAAGATGGTTACAT 1073
| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 997 ATAACTAAAGAAACTGAGGCCT-TTCCTAACTCAACCGAGGGGCTGAAAGATAGTTACAT 1055
Query 1074 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1115
Query 1134 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1175
Query 1194 TGAAAATGAGTTGAGAGACCTTAGGGCACGTGAGCTAATGCGAATAGAAGAGGCAGCAAT 1253
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1176 TGAAAATGAGTTAAGAGACCTTAGGGCACGTGAGCTAATGCGTATAGAGGAGGCAGCAAT 1235
Query 1254 ATTGGATAAGGAGCTAAAAAGAGAAAGAACAAAAGCAGCCGCTGCTATCAAAGCAATCCA 1313
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 1236 ATTGGATAAGGAGCTAAAAAGAGAACGAACAAAAGCAGCAGCTGCTATTAAAGCAATCCA 1295
Query 1314 GGAGAGAATGGAAGATAAGCTCAAAACTGAAATTGAACAAAAGGAAACTGAAGCGCAGTT 1373
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1296 GGAGAGAATGGAAGATAAGCTCAAAGCTGAACTTGAACAAAAGGAAACTGAAGCGCAGTT 1355
Query 1374 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTGCGGA-AATTGCAAAAG 1432
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1356 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTTCG-ACAATTGCAAAAG 1414
Query 1433 AAAAGGCAGCACAAATTGAAAAGATGGCAGAGGCAGATAGCAATATAAAGGCGCTGAGTA 1492
||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 1415 AAAAGGCAGCACAGATTGAAAAAATGGCAGAGGCAGATCTTAATATAAAGGCACTGAGTA 1474
Query 1493 TGGCGTTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1552
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1534
Query 1553 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAATCCAAAAAGAAATCA 1612
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1535 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAGTCCAAAAAGAAATCG 1594
Query 1613 ATATGCTTCAGACTTATCTTGAAGGGACTCAGAAGGATTCAATCCTAGGCTTGGTATTAT 1672
||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1595 ATACGCTTCAGACTTATCTTGAAGGGACTCATAAAGATTCAATCCTAGGCCTGGTATTAT 1654
Query 1673 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1714
Query 1733 AGTTTGATACCTTGAAAGGAACACTTAGACACTTCAGTCTCATTCCACCTGGTGGCGGAG 1792
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1715 AGTTTGATACCTTGAAAGGAACACTTAGACATTTCAGTCTCATTCCACCTGGTGGCGGAG 1774
Query 1793 GAATCTTAGCACATTCCCTAGCACAAGTAGCATCTTGGCTAAAGTTCAAAGAAGTGGATC 1852
| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 1775 GCATCTTAGCACATTCCCTAGCACATGTAGCATCTTCGCTAAAGTTTAAAGAAGTGGATC 1834
Query 1853 ACGCAAATGGAGGCATCGAATCTGTAATTAAAAAGGTTGATAATTACTTGGCGGAAGGAA 1912
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1835 AAGCTAATGGAGGCATCGAATCTGTAATTAAAAAGGTGGATAATTACTTGGCGGAAGGAA 1894
Query 1913 AACTAGCAGAAGCAGCAGCTGCGCTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1972
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1895 AACTAGCAGAAGCAGCAGCAACACTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1954
Query 1973 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2014
Query 2033 TTCTCCAATCTTATGCAACTTGTGTCAGCCTCACTTGAATCCCTCCCAGATCTTCCATTG 2092
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 2015 TTCTCCAATCTTATGCAACTTGTGTTAGCCTCACTTGAATCCCTTCCAGATCTTCCATTG 2074
Query 2093 AGGTACATTGCtt-tt-tttttATTTTGGAATTCGATACAGAGATTCCTGGAGtt 2145
||||||||||||| || ||||| |||| |||||||||| |||||||||||||||
Sbjct 2075 AGGTACATTGCTTCTTCTTTTT-TTTT--AATTCGATACTGAGATTCCTGGAGTT 2126
Score = 283 bits (153), Expect = 5e-75
Identities = 206/231 (89%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 2145 tttttttGGTCAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTCTAAATCACA 2204
||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2159 TTTTTCTGGTGAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTTTGAATCACA 2218
Query 2205 GCTGTTGATGTTATCTGAGTTAGAATGTTAACA-AAAGTTTGA-ATCAAAAATAAGATTG 2262
|||||| ||||||||||| ||||||||||| || ||||||||| | |||||||||||| |
Sbjct 2219 GCTGTTCATGTTATCTGAATTAGAATGTTACCAGAAAGTTTGATA-CAAAAATAAGATCG 2277
Query 2263 AATCTCACGAATTTATGATTTTTGTCTACATTGGGATCAGAAGATGTTGATTTGGTGATT 2322
||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 2278 AATCTCACGAATTTATGATATTTGTCTGGAATGGGATCAGGAGATGTTGATTTGGTGATG 2337
Query 2323 ATTGTTGTTG-T--AGTGATGTGGCATCATATGGTGTATCACTAGGCTTAT 2370
| |||||||| | | |||||||||||||| |||| ||||||| |||||||
Sbjct 2338 AATGTTGTTGCTGTACTGATGTGGCATCATGTGGTATATCACTGGGCTTAT 2388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117670077480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5