BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490755
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39730.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family... 1040 0.0
AT2G22170.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family... 427 6e-119
> AT4G39730.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family
protein | chr4:18432899-18433695 FORWARD LENGTH=711
Length=711
Score = 1040 bits (563), Expect = 0.0
Identities = 628/659 (95%), Gaps = 6/659 (1%)
Strand=Plus/Plus
Query 1 AAAA-ACAAATCGTTCACCGGAAACCCACAGAATGGCTCGCCGCGACGTTGTCCTCCCTT 59
|||| ||||||||||||||||||| ||| ||||||||| ||||| ||| |||||||||
Sbjct 20 AAAATACAAATCGTTCACCGGAAAAAAACAAAATGGCTCGTCGCGATGTTCTCCTCCCTT 79
Query 60 TCCTCCTCCTTCTCGCCACCGTCTCCGCCGTAGCTTTCGCCGAAGACGATCCAGACTGTG 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 80 TCCTCCTCCTTCTCGCCACCGTCTCCGCCGTAGCTTTCGCCGAAGATGATCCAGACTGTG 139
Query 120 TTTACACATTCTACCTAAGAACCGGATCGATCTGGAAAGCCGGAACCGATTCGATCATCA 179
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TATACACATTCTACCTCAGAACCGGATCGATCTGGAAAGCCGGAACCGATTCGATCATCA 199
Query 180 GCGCAAGAGTCTACGATAAGTACGGTGACTACATCGGAATCAAAAACCTTCAAGCTTGGG 239
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 200 GCGCAAGAATCTACGATAAGGACGGTGACTACATCGGAATCAAAAACCTTCAAGCTTGGG 259
Query 240 GTGGATTAATGGGACCTGATTACAATTACTTCGAGAGGGGTAATCTCGACATTTTCAGTG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CTGGATTAATGGGACCTGATTACAATTACTTCGAGAGGGGTAATCTCGACATTTTCAGTG 319
Query 300 GAAGAGCACCGTGTTTACCTAGTCCGATCTGTGCCTTAAACCTAACCTCTGATGGCTCCG 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 320 GAAGAGCACCGTGTTTACCTAGTCCGATCTGTGCCTTAAACCTAACCTCCGATGGCTCCG 379
Query 360 GTGATCACCATGGTTGGTACGCTAATTACGTTGAGGTCACGACGGCTGGTGTTCACGCAC 419
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 380 GCGATCACCATGGTTGGTACGTTAATTACGTTGAGATCACGACGGCTGGTGTTCACGCAC 439
Query 420 AGTGCTCGACGCAGGATTTTGAGATTGAGCAATGGCTCGCTACTGATACTTCTCCTTATG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AGTGCTCGACGCAGGATTTTGAGATTGAGCAATGGCTCGCTACTGATACTTCTCCTTATG 499
Query 480 AGCTCACCGCCGTTCGTAACAATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCG 539
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGCTCACCGCCGTACGGAACAATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCG 559
Query 540 GGTCTGAGATCCGGAAAAAGCTTTCTTGGGTCGTTTAAGTGATGTGTAT-TGATTCGTGA 598
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 560 GGTCTGAGATTCGGAAAAAGCTTTCTTGGGTCGTTTAAGTGATGTGT-TGTGATTCGTGA 618
Query 599 GAGTC-TCTGTATTGTTTGTTTTGTCGTCGTCGTCTTGTGAGTGTAATGTGGCGTTAAT 656
|| | |||||||||||||| || |||| || ||||||||||||||||||||||||||
Sbjct 619 GACTTGTCTGTATTGTTTGTATTCTCGTTGT--TCTTGTGAGTGTAATGTGGCGTTAAT 675
> AT2G22170.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family
protein | chr2:9426849-9427817 REVERSE LENGTH=788
Length=788
Score = 427 bits (231), Expect = 6e-119
Identities = 449/553 (81%), Gaps = 19/553 (3%)
Strand=Plus/Plus
Query 32 ATGGCTCGCCGCGACGTTGTCCTCCCTTTC-CTCCTCCT--TC-TCGCCACCGTCTCCGC 87
||| ||||||| ||||| | || ||| || |||||||| || ||||||||||||||||
Sbjct 79 ATGCCTCGCCGTGACGTCCT-CTTCCTCTCACTCCTCCTCGTCATCGCCACCGTCTCCGC 137
Query 88 CGTAGCTTTCGCCGAAGACGATCCAGACTGTGTTTACACATTCTACCTAAGAACCGGATC 147
|| || || ||||| || || |||| ||||| |||||||||| ||| |||||||||||
Sbjct 138 TGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATTCTTCCTTAGAACCGGATC 197
Query 148 GATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAGTCTACGATAAGTACGGTGA 207
| || |||||||| || ||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 198 AACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGA 257
Query 208 CTACATCGGAATCAAAAACCTTCAAGCTTGGGGTGGATTAATGGGACCTGATTACAATTA 267
||||||||| ||| |||||| |||| |||||||| ||||||||||| | |||||| ||
Sbjct 258 CTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTA 317
Query 268 CTTCGAGAGGGGTAATCTCGACATTTTCAGTGG-AAGAGCACCGTGT-TTACCTAGTCC- 324
|| |||||||||||||||||||||||||||||| || |||||| ||| || || || ||
Sbjct 318 CTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAA-AGCACCATGTCTT-CCGAGCCCA 375
Query 325 GATCTGTGCCTTAAACCTAACCTCTGATGGCTCCGGTGATCACCATGGTTGGTACGCTAA 384
| ||||| | ||||| || |||||||| ||||||||||| ||||| |||||||| | |||
Sbjct 376 G-TCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAA 434
Query 385 TTACGTTGAGGTCACGACGGCTGGTGTTCACGCACAGTGCTCG-ACGCAG-GATTTTGA- 441
||||| || |||||||| || || ||||| ||| |||||||| || || | ||| ||
Sbjct 435 CTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTAC-CAAAGCTTT-GAT 492
Query 442 GATTGAGCAATGGCTCGC-TACTGATACTTCTCCTTATGAGCTCACCGCCGTTCGTAACA 500
| ||||||||||||| || | | ||||| || || |||||||||| || ||||| || |
Sbjct 493 G-TTGAGCAATGGCTTGCGTCC-GATACATCGCCGTATGAGCTCAGTGCTGTTCGGAATA 550
Query 501 ATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATCCGGAAAAAGC 560
| ||||| || ||||||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 551 ACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACTC 610
Query 561 TTTCTTGGGTCGT 573
| |||||| ||||
Sbjct 611 TCTCTTGGATCGT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5