BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490767 Length=1596 Score E Sequences producing significant alignments: (Bits) Value AT4G39820.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2135 0.0 > AT4G39820.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18476007-18477943 REVERSE LENGTH=1689 Length=1689 Score = 2135 bits (1156), Expect = 0.0 Identities = 1356/1450 (94%), Gaps = 23/1450 (2%) Strand=Plus/Plus Query 130 GAAGCGACGACATTCGAATTAGCCTCATCACAAGTCACATCCGTCGCCGATCTACCACCG 189 ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 137 GAACCGACGGCATTCGAATTAGCCTCATCCCAAGTCACATCCGTCGCCGATCTACCACCG 196 Query 190 GAACGATTCAATTCGCTCGACGAATTGACCCACGATCTCGGCTCGCTCCACGAGCTTTCG 249 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 197 GAACGATTCAATTCGCTCGACGAATTAACACACGATCTCGGCTCGCTCCACGAGCTTTCG 256 Query 250 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTTCTC 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 257 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTCCTC 316 Query 310 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 376 Query 370 CTTCGTCGCTCCGATGAAGCTGCTCATGAGCTTAATTCTTTGCACGATTTCGACGGGACG 429 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 377 CTTCGTCGCTCCGATGAAGCTTCTCATGAGCTTAATTCCTTGCACGATTTCGACGGGACG 436 Query 430 CATTACAGGTACGAATCGTTCCCTGAGATCTACCCTAATCGGAGAGGATCGATGGTTCCT 489 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 437 CATTACAGGTACGAATCGTTCCCTGAGATTTACCCTAATCGGAGAGGATCTATGGTTCCT 496 Query 490 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 556 Query 550 TTAGATCGGTTATACGTTTTGCTTGACTTTGTTCGAGATCGAATTAGAGAGAAAGAATCT 609 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 557 TTAGATCGTTTATATGTTTTGCTTGACTTTGTTCGAGATCGAATCAGAGAGAAAGAATCT 616 Query 610 CAGAGTTTAGATG-GTTCTGTGGAATTGTGGAAGAAAAGAGAGACCTTTGTGATGAATTG 668 ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 617 CAGAGTTTAGA-GAGTTCTGTGGAATTGTGGAAGAAAAGAGAGACATTTGTGATGAATTG 675 Query 669 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTATCTTTGGATTTGATGAAGGA 728 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 676 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTGTCTTTGGATTTGATGAAGGA 735 Query 729 ATTGAT-AACTCGTGATCCGTTAGACCCGGTTTTGATTTCGAAGCTAGGTTCTGTTCAGA 787 |||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 736 ATTGATCAA-TCGTGATCCGTTAGACCCGGTTTTGATTTCGAAACTAGGGTCTGTTCAGA 794 Query 788 TGCAGTTTGGTGATATAGAAGGAGCTAAAACTACGTTTGATCGGGTCGAGAAGATGTTGA 847 |||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||| Sbjct 795 TGCAGTTTGGTGATGTAGAAGGAGCTAAAACTACGTTTGATAGAGTTGAGAAGATGTTGA 854 Query 848 ATGAAGGAAAGAGCAATGGGTTATTGAATGAGATACAGTTCAAGAATCTTGTGGGGAGGA 907 ||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||| Sbjct 855 ATGAAGGAAAGAGCAATGGTTTATTGAACGAGATACAGTTCAACAATCTTGTTGGTAGGA 914 Query 908 ATAAGGCTTTGGTTCATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 967 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 ATAAGGCTTTGGTTTATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 974 Query 968 AATGCATTGAAAGGGATAACTCGGATATTATTGCTGTCAACAATAAGGCTCTTTGTTTGA 1027 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 975 AATGCATTGAAAGGGATAACTCTGATATTATCGCTGTCAACAATAAGGCTCTTTGTTTGA 1034 Query 1028 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCACTGGAGAGAGTGC 1087 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1035 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCATTGGAGAGAGTGC 1094 Query 1088 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAACTTGTGTAGTATGTATGAGTTGGCTT 1147 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1095 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAATTTGTGTAGTATGTATGAGTTGGCTT 1154 Query 1148 ATGTTAATCACACCGATGTCAAGCGGACGTTGAACAATTGGATTGCGCGTGTTGCTCCTG 1207 |||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 1155 ATGTTAATCATACTGATGTTAAGCGGACGTTAAACAATTGGATTGCACGTGTTGCTCCTG 1214 Query 1208 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTGTAT-CTGTTCTTCT-TCCATT 1265 |||||||||||||||||||||||||||||||||||||| || | | | ||| Sbjct 1215 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTC-ATTCCAAACAAAGGTA-ATT 1272 Query 1266 CTTGAAT---TTTCCCTTTTCTA-GATCAAAGATGTTGATCTTGCTGGGTTTGGCCTCAG 1321 | || ||| | ||| | ||| ||| | |||||| ||||||||||||||| Sbjct 1273 AGTCAAAGAGTTTATGTCTTCAATGATGAAACAA----ATCTTGGTGGGTTTGGCCTCAG 1328 Query 1322 CTGGAGTCTCTGTTGATGCGATTACCGGCTACAAGTTTGTTGTAGTTTTCTATTGT--AA 1379 |||||| |||||||| ||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 1329 CTGGAGACTCTGTTGTTGCAATTACCGGCTTCAAATTCGTTGTAGTTTTCTGTTGTGTAA 1388 Query 1380 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTTTCCTGCATTCGTTTTCGTCA 1439 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1389 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTT-CCTGCATTCGTTTTC-TCA 1446 Query 1440 TATTCATCTTCTTATAACGTTTTTTGTTACACTTGCCGTTAACCACTAATGACGAATGTG 1499 ||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||| Sbjct 1447 TATTCATCTTCTTATAACGTTTTTT-TG-CATTTGCCGTTAACCACTAATGAAGAATGTG 1504 Query 1500 TGTTCTTTCAACTCTTCCTATGCACAGAGATTTTGGGTAA-TCAAGTATTTAAAGCCATG 1558 ||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1505 TGTTCTTGCAACTCTTCCTATGCACAGAGATTTTGGGTAAATCAAATATTTAAAGCCATG 1564 Query 1559 TATTTTGAGT 1568 |||||||||| Sbjct 1565 TATTTTGAGT 1574 Score = 113 bits (61), Expect = 4e-24 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCTGAATTCAATCCCTCTTCCACTGAT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 44 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCCGAATTCAATCCCTCCTCCACTGAT 103 Query 61 TCCACCG 67 ||||||| Sbjct 104 TCCACCG 110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78814855650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5