BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490786 Length=993 Score E Sequences producing significant alignments: (Bits) Value AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB ... 1426 0.0 AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 117 2e-25 > AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB GTPase homolog A4B | chr4:18542551-18543978 FORWARD LENGTH=1045 Length=1045 Score = 1426 bits (772), Expect = 0.0 Identities = 859/899 (96%), Gaps = 14/899 (2%) Strand=Plus/Plus Query 98 AGAGAAGTGTTTCAATAGTTCGCCGTCAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 157 |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 142 AGAGAAGTGTTTCAATAGTTTGGCGTGAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 201 Query 158 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTGATCGGAGATTCGGCTGTTGGGAAA 217 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 202 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTAATCGGAGATTCGGCTGTTGGGAAA 261 Query 218 TCACAACTACTTGCTCGATTCGCTAGAGACGAATTCAGTATGGATTCTAAAGCCACCATC 277 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 262 TCGCAACTACTTGCTCGATTCGCTAGAGACGAATTCAGCATGGATTCTAAAGCCACCATC 321 Query 278 GGCGTCGAGTTCCAAACTCGTACGCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 337 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 322 GGCGTCGAGTTCCAAACTCGTACCCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 381 Query 338 TGGGATACCGCTGGTCAGGAAAGATACAGAGCAGTTACAAGCGCATACTACAGAGGAGCA 397 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 382 TGGGATACCGCTGGTCAGGAAAGATACAGAGCCGTTACAAGCGCATACTACAGAGGAGCA 441 Query 398 GTTGGTGCAATGCTGGTTTATGATATGACTAAACGCGAAACCTTTGAGCATATCCCTCGT 457 ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| || ||| Sbjct 442 GTTGGCGCAATGCTGGTTTATGATATGACGAAACGTGAGACCTTTGAGCATATTCCGCGT 501 Query 458 TGGCTTGAAGAACTGAGGGCGCACGCCGATAAGAACATTGTCATCATCCTTATTGGAAAC 517 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 502 TGGCTTGAAGAACTGAGGGCGCACGCTGATAAGAACATTGTCATCATCCTTATTGGAAAC 561 Query 518 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 621 Query 578 AAGGAAGGACTCTTTTTCCTCGAGACCTCAGCTTTAAACGCAACCAATGTCGAAAACTCC 637 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 622 AAGGAAGGACTCTTTTTCCTCGAGACCTCTGCTTTAAACGCAACCAATGTCGAAAACTCC 681 Query 638 TTCAACACTCTAATGACAGAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTGTC 697 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 682 TTCAACACTCTAATGACTCAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTG-- 739 Query 698 GAGAATCAAGGCGACTCAAATAACCCCGGTTCCTTGGCTGGTAAGAAGATTGTCATCCCA 757 | | ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 740 -A-A-----GGCGACTCAAATAACCCCGGTTCATTGGCTGGTAAGAAGATTCTCATCCCA 792 Query 758 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACATGTTGTAGTTCTTCTTGATCTGTC 817 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 793 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACTTGTTGTACTTCTTCTTGATCTGTC 852 Query 818 TCGTTAC--AAGCAAGATTCAttttttttCCTCCTGAAATTTGGTGATAGAGAATGCTAC 875 || | || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 853 TCCT-ACTCAAGCAAGATTCATTTTTTTTCCTCCTGAAATTTG-TGATAGAGAATGCTAC 910 Query 876 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTGGTTCATTCAACATTGGTGTG 935 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 911 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTAGTTCATTAAACATTGGTGTG 970 Query 936 CAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAATATGAAACAA 993 |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 971 CAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAATATGAAACAA 1029 Score = 154 bits (83), Expect = 2e-36 Identities = 93/97 (96%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 1 AATAATCAGCCAACTAGCTTTTTTAATTTTCTTCTCTACAATTCCTCTGTCGCTCTCACC 60 |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| Sbjct 1 AATAATCAGCCAACTAGC-TTTTTAA--TT-TTCTCTACAATTCCTCTGTCGCTCTCACC 56 Query 61 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 97 ||||||||||||||||||||||||||||||||||||| Sbjct 57 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 93 > AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:18543893-18547523 REVERSE LENGTH=2528 Length=2528 Score = 117 bits (63), Expect = 2e-25 Identities = 68/70 (97%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 925 ACATTGGTGTGCAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAA 983 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 2528 ACATTGGTGTGCAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAA 2469 Query 984 TATGAAACAA 993 |||||||||| Sbjct 2468 TATGAAACAA 2459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48626654296 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5