BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490821
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxyme... 2942 0.0
AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2... 726 0.0
> AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase
1 | chr4:17831731-17834927 REVERSE LENGTH=1899
Length=1899
Score = 2942 bits (1593), Expect = 0.0
Identities = 1777/1861 (95%), Gaps = 32/1861 (2%)
Strand=Plus/Plus
Query 1 AAAAGAGGGAAAAAATTCGAAAATTTTCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAGGGAAAAAATTCGAAAATTTGCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60
Query 61 GCCACAATTCTCTCTTCATCTCTCCACAAGATAAACCCAATTTTG------tt-tt-t-t 111
||||||| | |||| ||| |||||||||||||||||||| || || | |
Sbjct 61 GCCACAA-T-TCTC-TCA------AACAAGATAAACCCAATTTTGTTATTTTTGTTCTCT 111
Query 112 -tt-t-t-t-GTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACCagagagagagag 166
|| | | | |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 112 CTTCTCTCTCGTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACC----AGAGATAG 167
Query 167 agagagGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AGAGAGGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 227
Query 227 GACAAACCCATTCGTCCTCTTA-TCAGATCCACTTCTTGTTACATGTCTTCGTTGCCCAG 285
|||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||
Sbjct 228 GACAAACCCATTCGTCCTCTTATTC-GATCCACTTCATGTTACATGTCTTCTTTGCCCAG 286
Query 286 TGAAGCTGTTGATGAGAAGGAGAGGTCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 345
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 287 TGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 346
Query 346 TTTAGAGGAGGTTGACCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 405
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TTTAGAGGAGGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 406
Query 406 GAAGGGACTTGAGCTTATTCCATCTGAGAACTTCACATCTGTTTCCGTGATGCAAGCTGT 465
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 407 GAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGT 466
Query 466 TGGGTCTGTGATGACTAACAAATATAGTGAAGGGTATCCTGGTGCGAGATACTATGGAGG 525
||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 467 TGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTGCCAGATACTATGGAGG 526
Query 526 AAATGAGTACATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 585
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 586
Query 586 GTTAGATCCTGAAAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCTCCTGCCAACTT 645
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 GTTAGATCCTGAAAAGTGGGGAGTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTT 646
Query 646 CCATGTCTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCTCTTGATCTTCCTCA 705
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 647 CCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATCTTCCTCA 706
Query 706 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCTGCTGTGTCTAT 765
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 707 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTGTCTAT 766
Query 766 CTTCTTTGAAACAATGCCTTATCGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 825
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 767 CTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 826
Query 826 GATGGAGAAAAGCGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCGAGTGCTTA 885
|||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 827 GATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTA 886
Query 886 TGCTCGATTGTATGATTATGCCCGCATCCGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 945
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 887 TGCTAGATTGTATGACTATGCCCGCATCAGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 946
Query 946 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1006
Query 1006 CGACTATGCTGATGTTGTAACCACCACAACCCACAAGTCACTTCGTGGACCCCGTGGAGC 1065
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1007 CGACTATGCTGATGTTGTAACCACCACAACTCACAAGTCACTTCGTGGACCCCGTGGAGC 1066
Query 1066 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAACAAGGGAAAGAGGTTTTGTA 1125
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1067 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAGCAAGGGAAAGAGGTTTTGTA 1126
Query 1126 TGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTCTTCAAGGTGGACCACACAA 1185
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1127 TGATTTTGAAGACAAGATCAACCAAGCTGTCTTCCCTGGTCTTCAAGGTGGTCCACACAA 1186
Query 1186 CCACACTATTACAGGATTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1245
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CCACACTATCACAGGACTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1246
Query 1246 ATACCAAGAGCAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTGATGGAGAAAGG 1305
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1247 ATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTAATGGAGAGAGG 1306
Query 1306 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTGAAA-CCCA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1307 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCT-AAAGCCCA 1365
Query 1365 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1425
Query 1425 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1485
Query 1485 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1545
Query 1545 ACAAAGCTGTGACATTGGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGCTGAAGG 1604
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1546 ACAAAGCTGTGACAATAGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGTTGAAGG 1605
Query 1605 ATTTTGTGTCAGCAATGGAATCTTCTTCAACCATTCAATCCGAGATTGCGAAACTGCGCC 1664
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1606 ATTTCGTGTCAGCAATGGAATCCTCTTCAACCATCCAATCCGAGATTGCGAAACTGCGCC 1665
Query 1665 ATGAAGTCGAGGAGTTCGCTAAGCAGTTCCCAACAATTGGTTTTGAGAAAGAAACCATGA 1724
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1666 ATGAAGTCGAGGAATTCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGA 1725
Query 1725 AGTACAAGAACTAAACTGTTTTATCCCACAAGTCTTTTTTATCATGCTTTGAATTCCCAT 1784
||||||||||||||||||||| | ||||||||| |||| | | |||||||||||||||||
Sbjct 1726 AGTACAAGAACTAAACTGTTTCACCCCACAAGTGTTTTCTGTTATGCTTTGAATTCCCAT 1785
Query 1785 GGAATGTATAGATGATACATGTAAAACACTATTTT-ACGCTATGCGAAAAATAATGATCT 1843
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1786 GGAATGTATAGATGATACATGTAAAACTCTATTTTCACGCTATGCGAAAAATAATGATCT 1845
Query 1844 G 1844
|
Sbjct 1846 G 1846
> AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase
2 | chr5:9418195-9422091 FORWARD LENGTH=2072
Length=2072
Score = 726 bits (393), Expect = 0.0
Identities = 740/908 (81%), Gaps = 22/908 (2%)
Strand=Plus/Plus
Query 389 GAGAAAGCTAGACAATGGAAGGGACTTGAGCTTATTCCATCTGAGAACTTCACATCTGTT 448
||||| |||||||||||||||||| |||| ||||| || || ||||| ||||| ||| |
Sbjct 309 GAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTA 368
Query 449 TCCGTGATGCAAGCTGTTGGGTCTGTGATGACTAACAAATATAGTGAAGGGTATCCTGGT 508
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct 369 TCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGA 428
Query 509 GCGAGATACTATGGAGGAAATGAGTACATAGACATGGCAGAAACCTTATGCCAGAAGCGC 568
|| |||||||||||||||||||||||||| |||||||| || || ||||| || || |||
Sbjct 429 GCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGC 488
Query 569 GCTCTT-GAAGCTTTCCGGTTAGATCC-TGAAAAGTGGGGAGTGAATGTGCAACCTTTGT 626
|| || |||||||| | ||||||||| | ||| |||||||| |||||||| |||| |
Sbjct 489 GC-ATTAGAAGCTTTTCAGTTAGATCCTTCTAAA-TGGGGAGTCAATGTGCAGTCTTTAT 546
Query 627 CTGGATCTCCTGCCAACTTCCATGTCTACACTGCATTGTTAAAGCCTCATGAAAGAATCA 686
| ||||| || || || ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 547 CAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCA 606
Query 687 TGGCTCTTGATCTT-CCTCATGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAG 745
|||| |||||| || ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 607 TGGCACTTGAT-TTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAG 665
Query 746 AAGATATCTGCTGTGTCTATCTTCTTTGAAACAATGCCTTATC-GATTGGACGAGAGCAC 804
|| ||||| ||||| || ||||| ||||| |||||||| || | ||||||| |||| |||
Sbjct 666 AAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATA-CAGATTGGATGAGAACAC 724
Query 805 TGGCTACATCGACTACGATCAGATGGAGAAA-AGCGCTACT-CTTTTCAGGCCAAAACTG 862
||| ||||| || || || ||| | || ||| || || | |||||||| || |||||
Sbjct 725 TGGTTACATTGATTATGACCAGCTAGA-AAAGAGTGCCG-TGCTTTTCAGACCGAAACTT 782
Query 863 ATTGTTGCTGGTGCGAGTGCTTATGCTCGAT-TGTATGATTATGCCCGCATCCGAAAGGT 921
|||||||| ||||| |||||||||||||| | | ||||| ||||| || || || |||||
Sbjct 783 ATTGTTGCGGGTGCAAGTGCTTATGCTCG-TCTATATGACTATGCACGTATTCGTAAGGT 841
Query 922 CTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGTGGTTTGGTTGC 981
||||||||||||||| || || ||| | || |||||||| || || ||||| ||||||||
Sbjct 842 CTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGC 901
Query 982 TGCTAATGTAATCCCTTCACCGTTCGACTATGCTGATGTTGTAACCACCACAACCCACAA 1041
|||| || || ||||| || || || ||||| |||||||| || || ||||| |||||
Sbjct 902 TGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAA 961
Query 1042 GTCACTTCGTGGACCCCGTGGAGCCATGATTTTCTTCAGAAAGGGTGTTAAG-GAAATTA 1100
|| ||||| || || | || || ||||| ||||| || ||||| ||||| || ||||
Sbjct 962 ATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGG-GTTAAAAGAGATTA 1020
Query 1101 ACAAACAAGGGAAAGAGGTTTTGTATGATTTTGAAGACAAGA-TCAATCAAGCTGTCTTC 1159
||||||||||||||||||| ||||||| | ||| |||| || | ||||||||||| ||
Sbjct 1021 ACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACA-GAATTAATCAAGCTGTTTTT 1079
Query 1160 CCTGGTCTTCAAGGTGGACCACACAACCACACTATTACAGGAT-TAGCTGTTGCTTTGAA 1218
||||| || |||||||| ||||| || |||||||| || || | |||| |||||| ||||
Sbjct 1080 CCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGG-TCTAGCAGTTGCTCTGAA 1138
Query 1219 ACAGGCAACTACTTCAGAGTACAAAGCATACCAAGAGCAAGTCCTGAGTAACAG-TGCAA 1277
||||||| ||| | |||||||| || ||||| || ||||| || |||| | | |||
Sbjct 1139 GCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCT-CAA 1197
Query 1278 AGTTTGCT 1285
||||||||
Sbjct 1198 AGTTTGCT 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91565794080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5