BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490829
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37870.1 | Symbols: PCK1, PEPCK | phosphoenolpyruvate carbox... 3578 0.0
AT2G14840.1 | Symbols: | pseudogene, similar to phosphoenolpyr... 207 3e-52
AT5G28996.1 | Symbols: | pseudogene, similar to ATP-dependent ... 196 6e-49
> AT4G37870.1 | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase
1 | chr4:17802694-17806539 REVERSE LENGTH=2413
Length=2413
Score = 3578 bits (1937), Expect = 0.0
Identities = 2128/2219 (96%), Gaps = 18/2219 (1%)
Strand=Plus/Plus
Query 1 TTCGCATCATTTTGTATCATCCC-TGAAAACCTTAAATGatcatctccttcgatcattaa 59
||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||
Sbjct 1 TTCGCATCATTTTGTATCATCCCTTGAAAACGTTAAATGATCTTCTCCTCCGATCATTAG 60
Query 60 tctctttaatctttctca--atcttcttgttcttgatctctcttcctcCGTG-AAAAGAT 116
|||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct 61 TCTCTTTAATCTTTCTCAGCCTCTTCTTGTTCGTGATCTCTCTTCCTCCG-GAAAAAGAT 119
Query 117 GTCGGCCGGTGACGGAAATGCTACTAACGGTGACGGAGGATTTAGTTTCCCTAAAGGACC 176
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GTCGGCCGGTAACGGAAATGCTACTAACGGTGACGGAGGGTTTAGTTTCCCTAAAGGACC 179
Query 177 GGTGATGCCGAAGATAACGACCGGAGCAGCAAAGAGAGGTAACGGAATCTGCCACGACGA 236
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 180 GGTGATGCCGAAGATAACGACCGGAGCAGCAAAGAGAGGTAGCGGAGTCTGCCACGACGA 239
Query 237 TAGTGGTCCGACGGTGAATGCCACAACCATCGATGAGCTTCATTCGTTACAGAAGAAACG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGTGGTCCGACGGTGAATGCCACAACCATCGATGAGCTTCATTCGTTACAGAAGAAACG 299
Query 297 TTCTGCTCCTACCACACCGATCAACCAAGGCGCCGCCGCTGCTTTCGCCGCCGTCTCCGA 356
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 300 TTCTGCTCCTACCACACCGATCAACCAAAACGCCGCCGCTGCTTTTGCCGCCGTCTCCGA 359
Query 357 GGAGGAGCGTCAGAAGATTCAGCTTCAATCTATCAGTGCATCGTTAGCTTCGTTAACGAG 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GGAGGAGCGTCAGAAGATTCAGCTTCAATCTATCAGTGCATCGTTAGCATCGTTAACGAG 419
Query 417 AGACTCAGGACCAAAGGTGGTGAGAGGAGATCCGGCGGAGAAGAAGACCGATGGTTCAAC 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGTCAGGACCAAAGGTGGTGAGAGGAGATCCGGCGGAGAAGAAGACCGATGGTTCAAC 479
Query 477 TACTCCGGCGTACGCACACGGCCAACATCATTCTATCTTTTCTCCGGCTACTGGTGCCGT 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TACTCCGGCGTACGCTCACGGCCAACATCATTCTATCTTTTCTCCGGCTACTGGTGCTGT 539
Query 537 CAGTGATAGCTCCTTGAAGTTTACACACGTCCTCTACAATCTTTCCCCTGCAGAGCTTTA 596
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 540 CAGTGATAGCTCCTTGAAGTTTACTCACGTCCTCTACAATCTTTCGCCTGCAGAGCTTTA 599
Query 597 CGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTTTGGCGAC 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTTTGGCGAC 659
Query 657 GCTTTCTGGTGCTAAGACTGGTCGTGCTCCGAGAGATAAGCGTGTTGTTAGAGATGCGAC 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 660 GCTTTCTGGTGCTAAGACTGGTCGTGCTCCCAGAGATAAGCGTGTTGTTAGAGATGCTAC 719
Query 717 TACTGAGGATGAGCTTTGGTGGGGGAAGGGTTCACCGAATATCGAAATGGATGAACATAC 776
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 720 TACTGAGGATGAGCTTTGGTGGGGAAAGGGTTCGCCGAATATCGAAATGGATGAACATAC 779
Query 777 TTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAATTCCTTGGATAAGGTCTTTGT 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 TTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAATTCCTTGGAAAAGGTCTTTGT 839
Query 837 CAATGATCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGATTGTTTCAGC 896
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 CAATGACCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGATTGTCTCAGC 899
Query 897 TAGAGCTTACCATTCACTGTTTATGCACAACATGTGTATCCGACCAACTCAGGAGGAGCT 956
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAGAGCTTACCATTCATTGTTTATGCACAACATGTGTATCCGACCAACTCAGGAGGAGCT 959
Query 957 TGAGAGCTTTGGTACTCCGGATTTCACTATATACAATGCTGGACAGTTTCCGTGTAACCG 1016
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 960 TGAGAGCTTTGGTACTCCGGATTTTACTATATACAATGCTGGGCAGTTTCCATGTAATCG 1019
Query 1017 TTACACTCATTACATGACGTCGTCCACTAGCGTAGATCTTAATCTGGCTAGAAGGGAAAT 1076
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1020 TTACACTCATTACATGACTTCGTCCACTAGCGTAGACCTTAATCTGGCTAGGAGGGAAAT 1079
Query 1077 GGTTATACTTGGTACTCAGTATGCGGGGGAAATGAAGAAAGGTCTTTTCAGTGTGATGCA 1136
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1080 GGTTATACTTGGTACTCAGTATGCTGGGGAAATGAAGAAGGGTCTTTTCAGTGTGATGCA 1139
Query 1137 TTACCTTATGCCTAAGCGCCGGATTCTCTCCCTTCATTCTGGATGCAATATGGGGAAAGA 1196
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TTACCTTATGCCTAAGCGTCGTATTCTCTCCCTTCATTCTGGATGCAATATGGGAAAAGA 1199
Query 1197 TGGAGATGTTGCTCTCTTCTTTGGACTTTCAGGTATTGTAGTCGGGAAGACAACACTGTC 1256
||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1200 TGGAGATGTTGCTCTCTTCTTTGGACTTTCAGGTAC------CGGGAAGACAACGCTGTC 1253
Query 1257 TACTGATCACAATAGGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGT 1316
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TACTGATCACAACAGGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGT 1313
Query 1317 TTCGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCGAGGGAGAAGGAGCC 1376
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 TTCGAACATTGAGGGTGGGTGCTATGCTAAGTGTGTTGATCTTTCGAGGGAGAAGGAGCC 1373
Query 1377 TGATATCTGGAACGCCATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTGATGAGCA 1436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGATATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTGATGAGCA 1433
Query 1437 CACCAGAGAAGTGGATTACTCTGATAAATCCGTTACAGAGAACACACGTGCTGCGTACCC 1496
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1434 CACCAGAGAAGTGGATTACTCTGATAAATCTGTTACAGAGAACACACGTGCTGCCTACCC 1493
Query 1497 GATTGAGTTCATTCCAAATGCGAAAATACCGTGTGTTGGTCCACACCCGAAAAATGTGAT 1556
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1494 AATTGAGTTCATTCCAAATGCGAAAATACCTTGTGTTGGTCCACACCCGACAAATGTGAT 1553
Query 1557 ACTTCTGGCTTGTGATGCGTTTGGTGTTCTCCCACCTGTGAGCAAGCTGAATCTGGCACA 1616
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 ACTTCTGGCTTGTGATGCCTTTGGTGTTCTCCCACCTGTGAGCAAGCTGAATCTGGCACA 1613
Query 1617 AACCATGTACCACTTCATAAGTGGTTACACTGCTCTGGTCGCTGGCACAGAGGATGGCAT 1676
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1614 AACCATGTACCACTTCATCAGTGGTTACACTGCTCTGGTTGCTGGCACAGAGGATGGTAT 1673
Query 1677 CAAGGAGCCAACAGCAACATTCTCAGCTTGCTTTGGTGCAGCTTTCATAATGTTGCATCC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CAAGGAGCCAACAGCAACATTCTCAGCTTGCTTTGGTGCAGCTTTCATAATGTTGCATCC 1733
Query 1737 CACAAAGTATGCAGCTATGTTAGCTGAGAAGATGAAGACACAAGGTGCTACTGGTTGGCT 1796
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1734 CACAAAGTATGCAGCTATGTTAGCTGAGAAGATGAAGTCACAAGGTGCTACTGGTTGGCT 1793
Query 1797 CGTGAACACTGGTTGGTCCGGTGGCAGTTATGGTGTTGGAAACAGAATCAAGCTGGCATA 1856
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CGTCAACACTGGTTGGTCTGGTGGCAGTTATGGTGTTGGAAACAGAATCAAGCTGGCATA 1853
Query 1857 CACTAGAAAGATCATCGATGCGATCCATTCAGGCAGTCTGTTGAAGGCGACCTACAAGAA 1916
||||||||||||||||||||| |||||||| |||||||| |||||||| | |||||||||
Sbjct 1854 CACTAGAAAGATCATCGATGCAATCCATTCGGGCAGTCTCTTGAAGGCAAACTACAAGAA 1913
Query 1917 AACCGAAATCTTTGGATTTGAAATCCCAACTGAGATTGAAGGGATACCTTCAGAGATCTT 1976
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1914 AACCGAAATCTTTGGATTTGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTT 1973
Query 1977 GGACCCCATCAACTCCTGGTCTGATAAGAAGGCACACAAGGAAACTCTGGTGAAACTGGG 2036
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1974 GGACCCCGTCAACTCCTGGTCTGATAAGAAGGCACACAAAGATACTCTGGTGAAACTGGG 2033
Query 2037 AGGTCTGTTCAAGAAGAATTTCGAGGTTTTTGCTAACCATAAGATTGGTGTGGATGGAAA 2096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2034 AGGTCTGTTCAAGAAGAACTTCGAGGTTTTTGCTAACCATAAGATTGGTGTGGATGGTAA 2093
Query 2097 GCTTACGGAGGAGATTCTCGCTGCTGGTCCTATCTTTTAGAAAACCCAAACAATGATGGA 2156
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 2094 GCTTACGGAGGAGATTCTCGCTGCTGGTCCTATCTTTTAGAAAAACCAAACTCTGA---A 2150
Query 2157 TGATGTTGTCGAAAAGAAA-A--GATCTATTATTTATTAAGAAGAATAAAATGAGACTT 2212
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 2151 TGATGTTGTCGAAAAGAAAGAAAGATCTACTATT-ATTAAGAAGAATAAAATGAGACTT 2208
Score = 126 bits (68), Expect = 9e-28
Identities = 84/92 (91%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 2268 GTCATTTATTTTTGTTGGGCTTTTGCCAGCATTTACATGATAGAACCAAGTACGAATAAT 2327
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2322 GTCATATATTTTTGTTGGGCCTTTGCCAACATTTACATGATAGAACCAAGTACGAATAAT 2381
Query 2328 ATGAATTCCGGTCCAATTTAATGATGGTTTTC 2359
|| ||||| |||||||| | |||||| |||||
Sbjct 2382 ATAAATTCTGGTCCAATCTGATGATGATTTTC 2413
> AT2G14840.1 | Symbols: | pseudogene, similar to phosphoenolpyruvate
carboxykinase, similar to GB:L31899; frameshift at base
16259 possibly caused by a base a pair deletion.; blastp
match of 72% identity and 3.7e-81 P-value to GP|13785471|dbj|BAB43909.1||AB050473
phosphoenolpyruvate carboxykinase {Flaveria
pringlei} | chr2:6371902-6373082 FORWARD LENGTH=1181
Length=1181
Score = 207 bits (112), Expect = 3e-52
Identities = 141/155 (91%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 590 AGCTTTACGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTT 649
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGCTTTATGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATTACTTCTAATGGAGCTT 60
Query 650 TGGCGACGCTTTCTGGTGCTAAGACTGGTCGTGCTCCGAGAGATAAGCGTGTTGTTAGAG 709
||||||||||||| |||||||||||||||| | |||||| ||| |||||| |||||| ||
Sbjct 61 TGGCGACGCTTTCGGGTGCTAAGACTGGTCAT-CTCCGACAGACAAGCGTATTGTTAAAG 119
Query 710 ATGCGACTACTGAGGATGAGCTTTGGTGGGGGAAG 744
|||| |||||| | |||||||||||||||| |||
Sbjct 120 TTGCGGCTACTGTGTATGAGCTTTGGTGGGGAAAG 154
Score = 187 bits (101), Expect = 4e-46
Identities = 109/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1258 ACTGATCACAATAGGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGTT 1317
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACTGATCACAACATGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGTT 892
Query 1318 TCGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCGAGGGAGAA 1370
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 893 TCGAACATTGAGGGTGGATGCTATGCAAAGTGTGTTGATCTTTCGAGGGAGAA 945
Score = 150 bits (81), Expect = 5e-35
Identities = 97/105 (92%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 827 AGGTCTTTGTCAATGATCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGA 886
||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||
Sbjct 407 AGGTCTTTGTCAATGATCAATACTTAAACTGAGATCCGGAGAACATAATCAAAGTCAAGA 466
Query 887 TTGTTTCAGCTAGAGCTTACCATTCACTGTTTATGCACAACATGT 931
|||| ||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 467 TTGTCTCACCTAGAGCCTACCATTCATTGTTTATGCACAACATGT 511
Score = 134 bits (72), Expect = 5e-30
Identities = 102/115 (89%), Gaps = 7/115 (6%)
Strand=Plus/Plus
Query 1126 AGTGTGATGCATTACCTT-ATGCCTAAGCGCCGGATTCTCTCCCTTCATTCTGGATGCAA 1184
||||| |||||||||||| | |||| | || ||||||||||||||||||||||||||
Sbjct 552 AGTGTTATGCATTACCTTAAAGCCT-A---CC--ATTCTCTCCCTTCATTCTGGATGCAA 605
Query 1185 TATGGGGAAAGATGGAGATGTTGCTCTCTTCTTTGGACTTTCAGGTATTGTAGTC 1239
|||||| |||||||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 606 TATGGGAAAAGATGGAGATATTGCCCTCTTCTTTGGACTTTCACGTATTGTAGTC 660
Score = 132 bits (71), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 742 AAGGGTTCACCGAATATCGAAATGGATGAACATACTTTCATGGTGAACAGAGAAAGAGCT 801
|||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AAGGGTTCGCCCATTATTGAAATGGATGAACATACTTTCATGGTGAACAGAGAAAGAGCT 291
Query 802 GTTGATTACTTGAATTCCTTGGATAAGGT 830
|||||||||||||||| |||||| |||||
Sbjct 292 GTTGATTACTTGAATTTCTTGGAAAAGGT 320
Score = 102 bits (55), Expect = 1e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 1406 CAGTTTTGGAAAATGTTGTGTTTGATGAGCACACCAGAGAAGTGGATTACTCTGATAAAT 1465
||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1055 CAGTTTTGG-AAATGTTGTATTTGATGAGCACACCAGAGAAGTGGATTACACTGATAAAT 1113
Query 1466 CCGTTACA 1473
| ||||||
Sbjct 1114 CAGTTACA 1121
> AT5G28996.1 | Symbols: | pseudogene, similar to ATP-dependent
phosphoenolpyruvate carboxykinase, blastp match of 83% identity
and 1.2e-13 P-value to GP|6707571|gb|AAF25671.1|AF212109_1|AF212109
ATP-dependent phosphoenolpyruvate carboxykinase
{Medicago sativa} | chr5:11020537-11020788 REVERSE LENGTH=252
Length=252
Score = 196 bits (106), Expect = 6e-49
Identities = 140/155 (90%), Gaps = 7/155 (5%)
Strand=Plus/Plus
Query 590 AGCTTTACGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTT 649
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 53 AGCTTTATGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCATTTCTAATGGAGCTT 112
Query 650 TGGCGACGCTTTCTGGTGCTAAGACTGGTCGTGCTCCGAGAGATAAGCGTGTTGTTAGAG 709
||||||||||||||||||||||||||| ||| |||||||||||| || ||| ||
Sbjct 113 TGGCGACGCTTTCTGGTGCTAAGACTGATCG-------AGAGATAAGCGTATTATTAAAG 165
Query 710 ATGCGACTACTGAGGATGAGCTTTGGTGGGGGAAG 744
|||| |||||||||||||||||||||||||| |||
Sbjct 166 ATGCAACTACTGAGGATGAGCTTTGGTGGGGAAAG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117117871485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5