BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490840 Length=1775 Score E Sequences producing significant alignments: (Bits) Value AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743... 2423 0.0 AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:97236... 987 0.0 > AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743887-17746678 FORWARD LENGTH=2028 Length=2028 Score = 2423 bits (1312), Expect = 0.0 Identities = 1487/1574 (94%), Gaps = 2/1574 (0%) Strand=Plus/Plus Query 85 CTCTCTGTGTACGTTAATGGCTCCGAGGAT-TGTCGTTGATCACTTTATCCTCACAACAA 143 ||||||||||||| |||||||||||| ||| | |||||||||||| |||||||||||||| Sbjct 183 CTCTCTGTGTACGCTAATGGCTCCGACGATAT-TCGTTGATCACTGTATCCTCACAACAA 241 Query 144 CGTTTTTCGCCTCCTTGTTCGCGTTTCTGCTTCTATACATCTTGCGTCGTCGGAGCAAGA 203 ||||| |||| ||||||||||||||||||||||||||| || ||||||| |||||||||| Sbjct 242 CGTTTGTCGCATCCTTGTTCGCGTTTCTGCTTCTATACGTCCTGCGTCGCCGGAGCAAGA 301 Query 204 AGATTCGTGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCCGGAACAGGTG 263 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 302 CGATTCATGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCTGGAACAGACG 361 Query 264 TCGATATCATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAA 323 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 362 TTGATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCA 421 Query 324 AGGAAGGGAGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCG 383 ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||| Sbjct 422 AGGAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATCGAATTGTCG 481 Query 384 GTGAATTGCTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 443 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GTGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 541 Query 444 TGAAGGAGATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 503 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TGAAGGATATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601 Query 504 CTAAACTGTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 563 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CTAAACTCTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 661 Query 564 ATGGGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTTCACTTCCCAATGTTCGAATGG 623 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 662 ATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCTTTACTTCCCAATGTTCGAATGG 721 Query 624 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 781 Query 684 AAACCAAAGATGGCCAAGAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTT 743 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 782 AAACCAAAGATGGCCAAGAGCTTAAGTCATTTGCTCCTCTCACTATTGTATGTGATGGTT 841 Query 744 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 901 Query 804 TGGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCG 863 | |||||||| |||||||||||||||||||| |||||||||||||| || |||||||| | Sbjct 902 TTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGTTGTTCTTG 961 Query 864 GCGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTG 923 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 962 GCGATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTAG 1021 Query 924 ATGTTCCAGGTTCAAAACTTCCTTCAGTCGCAAGCGGCGAAATGGCTCACCATCTCAAAA 983 |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 1022 ATGTACCAGGTTCAAAACTTCCTTCAGTTGCAAGTGGTGAAATGGCTCACCATCTCAAAA 1081 Query 984 CAACAGTCGCACCCCAGGTACCGCCTCAAATCCGCGATTCGTTCATTTCTGCGGTCGAAA 1043 ||| || ||||| |||||||| ||||| ||||| ||| | ||||||||||| ||||||| Sbjct 1082 CAATGGTTGCACCGCAGGTACCACCTCAGATCCGTGATGCTTTCATTTCTGCAGTCGAAA 1141 Query 1044 AAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACACCCG 1103 |||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||| | Sbjct 1142 AAGGTAACATAAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCAATTCATACACCTG 1201 Query 1104 GAGCTCTGCTTTTAGGCGACGCATTCAACATGCGCCATCCTCTTACCGGAGGCGGTATGA 1163 ||||| |||||||||| || || ||||||||||||||||||||||| ||||| ||||||| Sbjct 1202 GAGCTTTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTACTGGAGGTGGTATGA 1261 Query 1164 CCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTATTAAACCCGCTCGTCGACTTAA 1223 |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1262 CCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTATTGAACCCGCTCGTCGACTTAA 1321 Query 1224 CCAACAAAGAGTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAAAACCGGTTG 1283 |||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| Sbjct 1322 CCAACAAAGAGTCCTTATCCAAATACATAGAATCATTCTACACATTGCGGAAACCGGTTG 1381 Query 1284 CTTCGACTATCAATACGCTCGCAGGAGCTCTTTACAAAGTCTTTTTGGCTTCTCCAGACG 1343 |||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||| Sbjct 1382 CTTCGACTATCAATACACTCGCAGGCGCTCTTTACAAAGTCTTTTTAGCATCTCCAGACG 1441 Query 1344 ATGCGAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1403 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 ATGCAAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1501 Query 1404 CCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATGAGCCTTGTTCTTC 1463 | |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 1502 CATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACCCACGACCTATGAGCCTTGTTCTTC 1561 Query 1464 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCTTCCGTCA 1523 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1562 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCGTCCGTTA 1621 Query 1524 AACGGTTATGGCTCGGAGCGAGACTAATCTCGAGTGCTTCAGGGATAATATTTCCAATAA 1583 ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1622 AACGGTTATGGCTTGGAGCTAGACTAATCTCGAGTGCTTCAGGGATCATATTTCCAATAA 1681 Query 1584 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1682 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1741 Query 1644 CTCCTCCTACTCCT 1657 |||||||||||||| Sbjct 1742 CTCCTCCTACTCCT 1755 Score = 134 bits (72), Expect = 4e-30 Identities = 79/82 (96%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1695 GTGGTTTGATTTGGTCTTTACGAACTTTGGTTTGAAATTTGTACTCA-TCCATTACAAAC 1753 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1856 GTGGTTTGATTTGGTTTTTACGAACTTTGGTTTGAAATTTGTACTCAGTCCATTACAGAC 1915 Query 1754 AAAATCATCAAGTAAATAAGTA 1775 |||||||||||||||||||||| Sbjct 1916 AAAATCATCAAGTAAATAAGTA 1937 > AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:9723680-9726270 REVERSE LENGTH=2025 Length=2025 Score = 987 bits (534), Expect = 0.0 Identities = 1125/1407 (80%), Gaps = 54/1407 (4%) Strand=Plus/Plus Query 272 ATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAAAGGAAGGG 331 ||||||||||| |||||||||||||| | || ||||||||||| || || |||||||| Sbjct 376 ATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCTCTTGCTCATACTCTCGGCAAGGAAGGA 435 Query 332 AGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCGGTGAATTG 391 |||||||| ||||||||||||||||| || |||||| ||| ||||||| ||||||||| Sbjct 436 AGAAGAGTGCACGTTATAGAAAGAGATTTTTCTGAGCAAGACAGAATCGTTGGTGAATTG 495 Query 392 CTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGTGAAGGAG 451 ||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||| || Sbjct 496 CTTCAACCTGGTGGTTATTTGAAGTTAATAGAACTTGGACTTGAAGATTGTGTGAAGAAG 555 Query 452 ATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACACTAAAC- 509 || ||||| || | ||||||||||||||| |||||||||||||||||| || ||||||| Sbjct 556 ATTGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAGCATACTAAACT 614 Query 510 TGTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-CACAATG 566 || ||||||| |||| | | ||||||||| ||||| | |||| | || ||| || |||| Sbjct 615 TG-CTTACCCCTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCCATAATG 670 Query 567 GGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTT-CACTTCCCAATGTTCGAATGGAG 625 |||||||||| ||| | |||||||| ||||| ||| | ||| | ||||| ||| |||| Sbjct 671 GGAGATTTGTACAGAGAATGCGAGAAAAAGC-CCTTACTCTTTCAAATGTACGATTGGAA 729 Query 626 CAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACAAA 685 |||||||| || || |||||| | |||||| |||| | ||| ||||| |||| ||||| | Sbjct 730 CAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGACAATTAAAGGGGTTCGATACAGA 789 Query 686 ACCAAAGATGGCCAA-GAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTTG 744 || ||||| || ||| || ||| |||||||||||||||||| ||||||||||||||||| Sbjct 790 ACAAAAGA-GGGCAATGAGTTTAGATCATTTGCTCCTCTCACAATTGTATGTGATGGTTG 848 Query 745 TTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCGT 804 |||||||||||||||||| ||||| ||||||||||||||||| |||||||| | ||| || Sbjct 849 TTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGTGGATGTGCCATCTACTTTTGT 908 Query 805 GGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCGG 864 |||||| || |||||||| || ||||| |||||| | || ||||| || ||||||||||| Sbjct 909 GGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCACGTTGTTCTCGG 968 Query 865 CGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTGA 924 |||||||||||||| ||| | ||||| |||||||| || |||||||||||||| || || Sbjct 969 TGACCCATCACCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTTGCTTAGTAGA 1028 Query 925 TGTTCCAGGTTCAAAA-CTTCCTTC-AGTCGCAAGCGGCGAAATGGCTCACCATCTCAAA 982 ||| || ||| ||||| |||||| | | | |||| || |||||||| | |||| ||| Sbjct 1029 TGTACCGGGT-CAAAAACTTCCTCCCATT-GCAAATGGTGAAATGGCAAAGTATCTGAAA 1086 Query 983 ACAACAG-TCGCACCCCAGGTACCGCCTCAAA-TCCGCGATTCGTTCATTTCTGCGGTCG 1040 ||| | | | || || || ||||| | ||| |||| || | ||||| | || || | Sbjct 1087 ACA-CGGGTTGCGCCTCAAGTACCAAC-CAAGGTCCGTGAAGCATTCATCACCGCTGTTG 1144 Query 1041 AAAAAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACAC 1100 | |||||||| || ||||| ||||| ||||||||||||||||| || || |||| ||| | Sbjct 1145 AGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAGCTGATCCGATTCCTACTC 1204 Query 1101 CCGGAGCTCTGCTT-TTAGGCGACGCATTCAACATGCGCCATCCTCTTA-CCGGAGGCGG 1158 | |||||||| ||| || || || |||||||||||| | |||||| ||| |||| || || Sbjct 1205 CTGGAGCTCTTCTTCTT-GGTGATGCATTCAACATGAGACATCCT-TTAACCGGTGGTGG 1262 Query 1159 TATGACCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTAT-TAAACCCGCT-CGTC 1216 |||||||| |||||| | |||||||| | ||||| ||||| | ||| || | || | Sbjct 1263 GATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCT-TCTAAGGCCAATTCG-C 1320 Query 1217 GAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAA 1274 || |||| | |||||| | | || || || || || ||||| || ||||| | |||| Sbjct 1321 AACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCCTTTTACACACTACGAA 1378 Query 1275 AACCGGTTGCTTCGACTATCAATACGCTCGCAGGA-GCTCTT-TACAAAGTCTTTTTGGC 1332 |||| || ||||| || || ||||| | || ||| || || || || |||||||| || Sbjct 1379 AACCTGTAGCTTCCACCATTAATACATTGGC-GGATGCG-TTGTATAAGGTCTTTTTAGC 1436 Query 1333 TTCTCCAGACGATGCGAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATTATCTTAGCCTC 1390 ||| |||| || || |||| || |||||||| || ||||||||||| ||||||||||| Sbjct 1437 ATCTTCAGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCGACTATCTTAGCCTT 1494 Query 1391 GGAGGGGTTTGCTCCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATG 1450 ||||| |||| ||| || || ||||| || |||||||| ||||| ||||| || ||| || Sbjct 1495 GGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTCGTCCTCTG 1554 Query 1451 AGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTG-TAC 1508 || || ||||| || ||||| || || ||||| | || ||| ||||||| | | ||| Sbjct 1555 AGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAAT-GCTAC 1612 Query 1509 C-TCTCCCTTCCG-TCAA-ACGGTTATGGCTCGGAGCGAG-ACTAATCTCGAGTGCTTCA 1564 | | ||| ||| | | | | | || ||||| ||||| || | ||||||||||||||||| Sbjct 1613 CATTTCC-TTC-GATTGAGA-GCTTTTGGCTTGGAGCTAGGA-TAATCTCGAGTGCTTCA 1668 Query 1565 GGGATAATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACT 1624 | || || ||||||||||| |||||||| || || || ||||||||||||||||| || Sbjct 1669 AGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTACA 1728 Query 1625 ATTCCTGCCATTTACAGAGCTCCTCCT 1651 || |||||||| ||| | ||||||||| Sbjct 1729 ATCCCTGCCATATACCGTGCTCCTCCT 1755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87800753205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5