BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490848
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37680.1 | Symbols: HHP4 | heptahelical protein 4 | chr4:177... 2185 0.0
AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:179... 1888 0.0
AT2G40710.1 | Symbols: | Haemolysin-III related integral membr... 656 0.0
AT4G38290.1 | Symbols: | Haemolysin-III related integral membr... 514 1e-144
AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 165 1e-39
> AT4G37680.1 | Symbols: HHP4 | heptahelical protein 4 | chr4:17700711-17702753
FORWARD LENGTH=1546
Length=1546
Score = 2185 bits (1183), Expect = 0.0
Identities = 1442/1562 (92%), Gaps = 37/1562 (2%)
Strand=Plus/Plus
Query 1 CTTCCATCTTCGTCTTCTATTTTTCCTTCTTTCATCGATTTCATAATTCATACAAAACAA 60
|||||||| ||||||||||||||| |||||||| |||||||||| | | |||||| |
Sbjct 11 CTTCCATCGTCGTCTTCTATTTTTTCTTCTTTCTTCGATTTCAT-A--C---CAAAAC-A 63
Query 61 AGAACTCTCTGTTTTCGACAAAAACGAAACCTTGAGATCTATTTTGCTTGACTTTTTATT 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 64 AGAACTCTCTGTTTTCGACAAAAACGAAACCTTGAGATCTATTTTGATTGAC-TTTTAAG 122
Query 121 TTCCA-AAAGA-ATTTGAGAGttttttttGTTCTCGTCGGCATTGAAGATCCAGGGTTTG 178
| | ||| ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 123 AAAGAGAGAGATCTTTCTTAGAAGATTTTG-TCTCGTCGGCATTGAAGATCCAGGGTTT- 180
Query 179 AGATCTTTCGAAATTCAGAGAGAAAGAATGGGTGATGAGGACGCAGAGATCAAGGAACAT 238
| ||||||||||||||||||| || |||||||||||| | ||||||||||||||||||
Sbjct 181 -G-TCTTTCGAAATTCAGAGAG-AA-AATGGGTGATGA-G--GCAGAGATCAAGGAACAT 233
Query 239 TTGAAA-CCTCAAGCTTCATCTGAAACAATGGAGAAGAAACACAATGTGAAAGGGAAGAG 297
|| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 234 TT-AAAGCCACAAGCTTCATCTGAAACAATGGACAAGAAACATAATGTGAAAGGGAAGAG 292
Query 298 ATTATGGCAGAAAGTGAAGTATCAATTGGTGGAGTATCATTCATTGCCTGCTTATTTAAG 357
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 293 GTTATGGCAGAAAGTCAAGTATCAATTGGTGGAGTTTCATTCATTGCCTGCTTATTTAAG 352
Query 358 AGACAATGAGTATATCATCGGTCATTACCGATCCGAATGGCCGATTAAACAGATCCTTCT 417
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 353 AGACAATGAGTACATCATTGGTCATTACCGATCCGAATGGCCGATCAAACAGATTCTTCT 412
Query 418 CAGCATCTTTACCATCCATAATGAGACCTTGAATGTTTGGACGCACTTGATTGGGTTTTT 477
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 413 CAGCATCTTTACCATTCATAATGAGACTTTGAATGTTTGGACGCACTTGATTGGGTTTTT 472
Query 478 CCTGTTTCTGGCACTCACCATATACACAGCAACGAAAGTACCGAGCGTCGTGGATCTTCA 537
||||||| |||| ||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 473 CCTGTTTTTGGCGCTCACTATATACACTGCAACGAAAGTACCGAGTGTCGTGGATCTTCA 532
Query 538 TTCTCTTCAACACCGTTTACCTGATTTGTTGAGGAAAACAGATCTCCACAAACTTCACGC 597
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 533 TTCGCTTCAACACCGTTTACCCGATTTGTTGAGGAAAACAGATCTCCACAAACTTCATTC 592
Query 598 TGATCTCATGTCTCGCCTTCCTTCTAGTCCATCTAGTTGGCATGTAATGGACCTTCTTTA 657
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 593 TGAGCTCATGGCTCGCCTTCCTTCTAGTCCATCTAGTTGGCATGTGATGGACCTTCTTTA 652
Query 658 TAACTGTTTGCCTGAAAGATTTTCTCATGGCAACTACACCGACATGTGTGTTCTGCATTC 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 653 TAACTGTTTGCCTGAAAGATTTTCTCATGGCAACTACACTGACATGTGTGTTCTGCATTC 712
Query 718 GGTGAGGGAAGATCTTGCAAACATGATAGCTCCTTTGATCTTCCGGCCAATTACCCGATG 777
||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 713 TGTGAGGGAAGATCTTGCAAACTTGATAGCTCCTTTGATCTTCAGGCCAATTACTCGATG 772
Query 778 GCCGTTCTATGCATTTCTAGGCGGTGCAATGTTCTGTCTATTAGCAAGCAGCACATGCCA 837
|||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 773 GCCGTTTTATGCATTTCTAGGTGGTGCTATGTTCTGTCTATTAGCAAGCAGCACGTGCCA 832
Query 838 CCTCCTCTCATGTCACTCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTATGCTGG 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 833 CCTCCTCTCATGTCACTCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTACGCCGG 892
Query 898 AATCGCAGCTCTAATAGCTACTTCTTTCTACCCTCCGGTCTATTACTCCTTCATGTGTGA 957
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 893 CATCGCAGCTCTAATAGCGACTTCCTTCTACCCTCCGGTTTATTACTCCTTCATGTGTGA 952
Query 958 TCCTTTCTTCTGCAACCTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACAGTGCT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 953 TCCTTTCTTCTGCAACCTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACTGTGCT 1012
Query 1018 TGTCTCTCTCCTCCCGGTTTTCCAAAGCCCAGAGTTTCGGGTCGTGAGGGCGTCTCTGTT 1077
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1013 TGTTTCTCTCCTCCCGGTTTTCCAAAGCCCGGAGTTTCGGGTGGTGAGGGCGTCTCTGTT 1072
Query 1078 TTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGA 1137
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1073 CTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATAATCTTTTGGGA 1132
Query 1138 CCAACCTGAAGCGCTTCACACGACAGGATATGAAATTTTGATGGGTTTGCTCTACGGGTT 1197
|||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1133 CCAACCTGAAGCCCTTCACACGACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTT 1192
Query 1198 AGGAGCTTTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGGAAATTCGATAT 1257
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1193 AGGAGCTCTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATAT 1252
Query 1258 AGCTGGACATAGCCATCAGTTGTTTCATGTTCTGGTGGTTGCTGGTGCGTTCACACACTA 1317
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1253 AGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTGTTGCTGGTGCGTTCACGCACTA 1312
Query 1318 TAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGA---TGAAGATT 1374
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 TAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGAAGATGAAGATT 1372
Query 1375 GAAGATTAGATGGAATCTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGT 1434
|||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1373 GAAGATTAGATGGAATCTTTGA------A--TCTTGTTTGTAGTAGCTTCATATAAAAGT 1424
Query 1435 TGGATTATGTAAAGTCTTATGTGTAATCAAT-GTTGAATTGTTTCCTATATTCAACAAAG 1493
|||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1425 TGGATTATGTAAAGTCTTATATGTAATCAAACGTTTAATTGTTTCCTTTATTCAACAAAG 1484
Query 1494 GATTCATATTGTTAATCTACATAT-TGGT---GGTTACAGAAGCTGAAGGATTCATATTT 1549
|||| |||||||||||| |||||| | | ||||| ||||||||||||||||||||||
Sbjct 1485 GATTTATATTGTTAATCCACATATGTATTACTGGTTAAAGAAGCTGAAGGATTCATATTT 1544
Query 1550 TT 1551
||
Sbjct 1545 TT 1546
> AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:17948692-17950522
FORWARD LENGTH=1432
Length=1432
Score = 1888 bits (1022), Expect = 0.0
Identities = 1204/1289 (93%), Gaps = 24/1289 (2%)
Strand=Plus/Plus
Query 195 AGAGAGAAAGAATGGGTGATGAGGACGCAGAGATCAAGGAACATTTGAAA-CCTCAAGCT 253
|||||| || |||||||||||| | |||||||||||||||||||| ||| || ||||||
Sbjct 160 AGAGAG-AA-AATGGGTGATGA-G--GCAGAGATCAAGGAACATTT-AAAGCCACAAGCT 213
Query 254 TCATCTGAAACAATGGAGAAGAAACACAATGTGAAAGGGAAGAGATTATGGCAGAAAGTG 313
|||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 214 TCATCTGAAACAATAGACAAGAAACATAATGTGAAAGGGAAGAGGTTATGGCAGAAAGTC 273
Query 314 AAGTATCAATTGGTGGAGTATCATTCATTGCCTGCTTATTTAAGAGACAATGAGTATATC 373
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 274 AAGTATCAATTGGTGGAGTTTCATTCATTGCCTGCTTATTTAAGAGACAATGAGTACATC 333
Query 374 ATCGGTCATTACCGATCCGAATGGCCGATTAAACAGATCCTTCTCAGCATCTTTACCATC 433
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 334 ATTGGTCATTACCGATCCGAATGGCCGATCAAACAGATTCTTCTCAGCATCTTTACCATT 393
Query 434 CATAATGAGACCTTGAATGTTTGGACGCACTTGATTGGGTTTTTCCTGTTTCTGGCACTC 493
||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 394 CATAATGAGACTTTGAATGTTTGGACGCATTTGATTGGGTTTTTCCTGTTTTTGGCACTC 453
Query 494 ACCATATACACAGCAACGAAAGTACCGAGCGTCGTGGATCTTCATTCTCTTCAACACCGT 553
|| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 454 ACTATATACACTGCAACGAAAGTACCGAGTGTCGTGGATCTTCATTCGCTTCAACACCGT 513
Query 554 TTACCTGATTTGTTGAGGAAAACAGATCTCCACAAACTTCACGCTGATCTCATGTCTCGC 613
||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 514 TTACCCGATTTGTTGAGGAAAACAGATCTCCACAAACTTCATTCTGAGCTCATGTCTCGC 573
Query 614 CTTCCTTCTAGTCCATCTAGTTGGCATGTAATGGACCTTCTTTATAACTGTTTGCCTGAA 673
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 574 CTTCCTTCTAGTCCATCTAGTTGGCATGTGATGGACCTTCTTTATAACTGTTTGCCTGAA 633
Query 674 AGATTTTCTCATGGCAACTACACCGACATGTGTGTTCTGCATTCGGTGAGGGAAGATCTT 733
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 634 AGATTTTCTCATGGCAACTACACTGACATGTGTGTTCTGCATTCTGTGAGGGAAGATCTT 693
Query 734 GCAAACATGATAGCTCCTTTGATCTTCCGGCCAATTACCCGATGGCCGTTCTATGCATTT 793
|||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 694 GCAAACTTGATAGCTCCTTTGATCTTCAGGCCAATTACTCGATGGCCGTTTTATGCATTT 753
Query 794 CTAGGCGGTGCAATGTTCTGTCTATTAGCAAGCAGCACATGCCACCTCCTCTCATGTCAC 853
||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 754 CTAGGTGGTGCTATATTCTGTCTATTAGCAAGCAGCACGTGCCACCTCCTCTCATGTCAC 813
Query 854 TCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTATGCTGGAATCGCAGCTCTAATA 913
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 814 TCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTACGCCGGCATCGCAGCTCTAATA 873
Query 914 GCTACTTCTTTCTACCCTCCGGTCTATTACTCCTTCATGTGTGATCCTTTCTTCTGCAAC 973
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 874 GCGACTTCCTTCTACCCTCCGGTTTATTACTCCTTCATGTGTGATCCTTTCTTCTGCAAC 933
Query 974 CTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACAGTGCTTGTCTCTCTCCTCCCG 1033
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 934 CTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACTGTGCTTGTTTCTCTCCTCCCG 993
Query 1034 GTTTTCCAAAGCCCAGAGTTTCGGGTCGTGAGGGCGTCTCTGTTTTTTGGAATGGGATTC 1093
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 994 GTTTTCCAAAGCCTGGAGTTTCGGGTGGTGAGGGCGTCTCTGTTCTTTGGAATGGGATTC 1053
Query 1094 TCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGACCAACCTGAAGCGCTT 1153
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 TCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGACCAACCTGAAGCCCTT 1113
Query 1154 CACACGACAGGATATGAAATTTTGATGGGTTTGCTCTACGGGTTAGGAGCTTTGGTTTAT 1213
|||| |||||| ||||| ||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1114 CACATGACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTGTGGTTTAT 1173
Query 1214 GCAACTAGGATCCCAGAGAGATGGATGCCGGGGAAATTCGATATAGCTGGACATAGCCAT 1273
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1174 GCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCAT 1233
Query 1274 CAGTTGTTTCATGTTCTGGTGGTTGCTGGTGCGTTCACACACTATAGAGCTGGGCTAGTG 1333
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||
Sbjct 1234 CAGTTGTTTCATGTTCTGGTTGTTGCTGGTGCGTTAACGCACTATAGAGCTGGGCTA-TG 1292
Query 1334 TATCTTAAGTGGAGAGATATTGAAGGATGTTGA---TGAAGATTGAAGATTAGATGGAAT 1390
| | ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1293 -A------G---AGA--TATTGAAGGATGTTGAAGATGAAGATTGAAGATTAGATGGAAT 1340
Query 1391 CTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGTTGGATTATGTAAAGTC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 CTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGTTGGATTATGTAAAGTC 1400
Query 1451 TTATGTGTAATCAAT-GTTGAATTGTTTC 1478
|||| ||||||||| ||| |||||||||
Sbjct 1401 TTATCTGTAATCAAACGTTTAATTGTTTC 1429
> AT2G40710.1 | Symbols: | Haemolysin-III related integral membrane
protein | chr2:16980943-16981368 REVERSE LENGTH=426
Length=426
Score = 656 bits (355), Expect = 0.0
Identities = 403/426 (95%), Gaps = 4/426 (1%)
Strand=Plus/Plus
Query 1085 ATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGACCAACCT 1144
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATAATCTTTTGGGACCAACCT 60
Query 1145 GAAGCGCTTCACACGACAGGATATGAAATTTTGATGGGTTTGCTCTACGGGTTAGGAGCT 1204
||||| |||||||||||| | ||||| ||||||||||||||||| || ||||||||||||
Sbjct 61 GAAGCCCTTCACACGACATGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCT 120
Query 1205 TTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGGAAATTCGATATAGCTGGA 1264
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 CTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGA 180
Query 1265 CATAGCCATCAGTTGTTTCATGTTCTGGTGGTTGCTGGTGCGTTCACACACTATAGAGCT 1324
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 CATAGCCATCAGTTGTTTCATGTTCTGGTAGTTGCTGGTGCGTTCACGCACTATAGAGCT 240
Query 1325 GGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTT---GATGAAGATTGAAGATT 1381
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGAAGATGAAGATTGAAGATT 300
Query 1382 AGATGGAATCTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGTTGGATTA 1441
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATGGATTCTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGTTGGATTA 360
Query 1442 TGTAAAGTCTTATGTGTAATCAAT-GTTGAATTGTTTCCTATATTCAACAAAGGATTCAT 1500
||||||||||||| | ||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct 361 TGTAAAGTCTTATCTATAATCAAACGTTTAATTGTTTCCTTTATTCAATAAAGGATTCAT 420
Query 1501 ATTGTT 1506
||||||
Sbjct 421 ATTGTT 426
> AT4G38290.1 | Symbols: | Haemolysin-III related integral membrane
protein | chr4:17942871-17944047 FORWARD LENGTH=465
Length=465
Score = 514 bits (278), Expect = 1e-144
Identities = 327/350 (93%), Gaps = 6/350 (2%)
Strand=Plus/Plus
Query 1159 GACAGGATATGAAATTTTGATGGGTTTGCTCTACGGGTTAGGAGCTTTGGTTTATGCAAC 1218
|||||| ||||| ||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 120 GACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTCTGGTTTATGCAAC 179
Query 1219 TAGGATCCCAGAGAGATGGATGCCGGGGAAATTCGATATAGCTGGACATAGCCATCAGTT 1278
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 TAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCATCAGTT 239
Query 1279 GTTTCATGTTCTGGTGGTTGCTGGTGCGTTCACACACTATAGAGCTGGGCTAGTGTATCT 1338
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GTTTCATGTTCTGGTAGTTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTAGTGTATCT 299
Query 1339 TAAGTGGAGAGATATTGAAGGATGTTGATGAAGATTGAAGATTAGATGGAATCTTTGATG 1398
|||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||
Sbjct 300 TAAGTGGAGAGATATTGAAGGATGTTGA--A-GAT-GAAGATTAGATGGATTCTTTGATG 355
Query 1399 TTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGTTGGATTATGTAAAGTCTTATGTGT 1458
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 356 TTTTAAATCTTGTTTGTAGTAGCTTCATATAGAAGTTGGATTATGTAAAGTCTTATCTGT 415
Query 1459 AATCAAT-GTTGAATTGTTTCCTATATTCAACAAA-GGATTCATATTGTT 1506
|||||| ||| ||||||||||| |||||| |||| ||||| ||||||||
Sbjct 416 AATCAAACGTTTAATTGTTTCCTTTATTCATCAAAAGGATTGATATTGTT 465
> AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Protein of unknown function (duplicated
DUF1399) (TAIR:AT4G37900.1); Has 6 Blast hits to 6 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:29342157-29343824 FORWARD LENGTH=783
Length=783
Score = 165 bits (89), Expect = 1e-39
Identities = 133/152 (88%), Gaps = 12/152 (8%)
Strand=Plus/Plus
Query 1352 ATTGAAGGATGTTG-ATGAAGATTGAAGATTAGATGGAATC-TT-TGATGTTTTAAATCT 1408
|||||||||||||| || | || ||||||||||||||||| || ||||||||| |||||
Sbjct 618 ATTGAAGGATGTTGAAT-ATGAAGGAAGATTAGATGGAATCTTTGTGATGTTTTGAATCT 676
Query 1409 TGTTTGTAGTAGCTTCATATAAAAGTT-GGATTATGTAAAGTCTTATGTGTAATCAA-TG 1466
|| || | |||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 677 TG-TT-T-GTAGCTTCATATAAAA-TTATGATTATGTAAAGTCTTATGTGTAATCAAATG 732
Query 1467 TTGAA-TTGTTTCCTATATTCAACAAAGGATT 1497
|| || || |||||| ||||||||||||||||
Sbjct 733 TTTAACTT-TTTCCTTTATTCAACAAAGGATT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5