BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490862 Length=1504 Score E Sequences producing significant alignments: (Bits) Value AT4G37550.1 | Symbols: | Acetamidase/Formamidase family protei... 2302 0.0 AT4G37560.1 | Symbols: | Acetamidase/Formamidase family protei... 1836 0.0 AT4G37553.1 | Symbols: | Potential natural antisense gene, loc... 453 2e-126 > AT4G37550.1 | Symbols: | Acetamidase/Formamidase family protein | chr4:17643570-17645830 FORWARD LENGTH=1574 Length=1574 Score = 2302 bits (1246), Expect = 0.0 Identities = 1403/1479 (95%), Gaps = 10/1479 (1%) Strand=Plus/Plus Query 1 TTTTTACTGTAACAAGGACaaaagaaagagagaaaataaaagagatatatagaga-aaaa 59 |||| |||||| |||||||||||||||||||||||| ||||||| |||| ||||| |||| Sbjct 12 TTTTCACTGTATCAAGGACAAAAGAAAGAGAGAAAACAAAAGAGTTATACAGAGAGAAAA 71 Query 60 tcgtgaatagagagaTCACTGTACTTATTGGGTTTTGATGTTTGATGGCTCCACTGAGTC 119 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 72 -CGTGAATAGAGAGATCACTGTACTTATTGGGTTTTGATCTTTGATGGCTCCACTGAGTC 130 Query 120 CAAGAGTGGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGAACCAGCCACTGC 179 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 131 CAAGAGTAGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGGACCAGCCATTGC 190 Query 180 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 250 Query 240 GGGTGGAAATGATTGATTG-TATGGGAGGTGTTGTCAAAGACAATGACTCTGCAAGCGAT 298 |||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||| Sbjct 251 GGGTAGAAATGATTGA-TGCAATGGGAGGTGTTATCAAAGACAATGACTCTGCAAGCGAT 309 Query 299 ATCAAGAACGC-AGACCTAACCACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTGGA 357 ||||||||| | || |||||| ||||||||||||||||||||||||||||||||||| || Sbjct 310 ATCAAGAAC-CTAGTCCTAACTACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTAGA 368 Query 358 TGAGGATGGTGTTGCAGCT-AAGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 416 |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 369 TGAGGAAGGTGTTGCAGCTAAAG-CAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 427 Query 417 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGCGGCG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 428 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGTGGCG 487 Query 477 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 547 Query 537 ATGCCTACTCTCCTCAAATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 596 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 ATGCCTACTCTCCTCAGATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 607 Query 597 TTGGCACCGCGCCATCGA-TGGAACTCCTGAGAATATGGAATGAAAGGGAAAGACAATTA 655 ||||||| || ||||||| || ||||| |||||||||||||||| ||||||||||||||| Sbjct 608 TTGGCACTGCACCATCGAATG-AACTCTTGAGAATATGGAATGATAGGGAAAGACAATTA 666 Query 656 GAAGAAAGTGGTCTCAAGTCCCCAACACTATGTGAGGTTGTGCATCAACGGCCATTGGCA 715 |||||||||||| | |||||| ||||||||||||||| |||||||| |||||||| ||| Sbjct 667 GAAGAAAGTGGTGTTGAGTCCCTAACACTATGTGAGGTAGTGCATCAGCGGCCATTAGCA 726 Query 716 AACCTACCAACAGCTAAAGGATGCCTCCTAGGGAACATTGAAGAAGGAACACCAGAATGG 775 |||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 727 TGCCTACCAACAACTAAAGGATGTCTCCTCGGGAATATTGAAGAAGGAACACCAGAATGG 786 Query 776 GAAAGGATTGCTAACGAGGCTGCGAGGACGATACCAGGAAGAGAAAACGGAGGAAACTGT 835 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 787 GAAAGGATTGCAAACGAGGCTGCGAGGACAATACCAGGAAGAGAAAACGGAGGAAACTGT 846 Query 836 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGGGCT 895 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 847 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTATTTGTTGAAGGGGCT 906 Query 896 AATCTAAGCACAGGAGACATGCATTTCTCGCAAGGTGATGGTGAGATCTCATTCTGTGGA 955 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 907 AATCTAAGCACAGGAGACATGCATTTCTCACAAGGTGATGGTGAGATCTCGTTCTGCGGA 966 Query 956 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGGAATGGGATGCAA 1015 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 967 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGAAATGGGATGCAA 1026 Query 1016 GAATACCTTACGCCAATGGGACCGACCCCGCTCCATGTAAACCCAATCTTTGAGATAGGG 1075 || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1027 GAGTACCTTACGCCAATGGGACCTACCCCTCTCCATGTAAACCCAATCTTTGAGATAGGA 1086 Query 1076 CCAGTTGAACCGAGATTCTCAGAATGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1135 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1087 CCAGTGGAACCGAGGTTCTCAGAGTGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1146 Query 1136 GGGAGACAACATTACCTGGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1195 || | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GGAAAACAGCATTACCTAGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1206 Query 1196 GACTATCTCTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTGCTCTCATGTTGT 1255 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1207 GACTATCTTTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTACTCTCATGTTGT 1266 Query 1256 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCA 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1267 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTAGCA 1326 Query 1316 ATACCTACTGCCATCTTTGATCAGGATATTCGGCCAAAGACCCGAAAGGTTCCAGCAGGA 1375 |||||||| ||||||||||||||||||||| ||||||||| || |||||||||| |||| Sbjct 1327 ATACCTACAGCCATCTTTGATCAGGATATTAGGCCAAAGAATCGGAAGGTTCCAGTAGGA 1386 Query 1376 CCTCGGATAGTGAGGAAACCAGACGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1435 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1387 CCTCGGGTTGTGAGGAAACCAGATGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1446 Query 1436 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACAAAAA 1474 ||||||||||||||||||||||||||||||||||||||| Sbjct 1447 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACAAAAA 1485 > AT4G37560.1 | Symbols: | Acetamidase/Formamidase family protein | chr4:17646408-17648684 FORWARD LENGTH=1667 Length=1667 Score = 1836 bits (994), Expect = 0.0 Identities = 1269/1402 (91%), Gaps = 17/1402 (1%) Strand=Plus/Plus Query 80 GTACTTATTGGGTTTTGATGTTTGATGGCTCCA-CTGAGTCCAAGAGTGGTGGTGAAGGT 138 |||||||||||| || | |||||||||||||| | |||||| |||||||||||||||| Sbjct 61 GTACTTATTGGG-TTCG--GTTTGATGGCTCCAGC-AAGTCCACGAGTGGTGGTGAAGGT 116 Query 139 GGATTTGAAGAAGAAGCCATGGCAGCAGAAC-CAGCCACTGCACAATAGATGGCATCCGG 197 |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| | Sbjct 117 GGATTTGAAGAAGAGGCCATGGCAGCAG-ACTCAGCCACTGCACAATAGATGGCATCCTG 175 Query 198 AGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTT-TTTCCGGGTGGAAATGATTGAT 256 |||||||| |||| |||||||||||| |||||||||| ||| ||||||||||| |||| Sbjct 176 AGATACCATCAGTTGCAGAGGTCAAGACTGGTGAGTTGTTT-AGGGTGGAAATGGTTGAC 234 Query 257 TGTATGGGAGGTGTTGTCAAAGACA-ATGACTCTGCAAGCGATATCAAGAACGCAGACCT 315 || | |||||||| |||||||| | ||| |||||| ||||||| |||| | |||||| Sbjct 235 TGGACGGGAGGTGCAGTCAAAGA-AGATGGCTCTGCTGGCGATATTAAGAGCATAGACCT 293 Query 316 AACCACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTGGATGAGGATGGTGTTGCAGC 375 | ||| |||| |||| ||||||||||| | |||||||||||||||||||||||||| Sbjct 294 CTCTACTGTTCATTACCTGAGTGGGCCGATCAAAGTTGTGGATGAGGATGGTGTTGCAGC 353 Query 376 TAAGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGGGTCCTCTTCCAGGAGATGA 435 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 TAGGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGGGTCCTCTTCCAGGAGATGA 413 Query 436 ATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGCGGCGGTTTCTTGACTGACCATTT 495 |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 414 ATGGGGATTCACTGCTTCATTTGATAGAGAGAATGGCGGTGGTTTCTTGACTGACCATTT 473 Query 496 CCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCTATGCCTACTCTCCTCAAAT 555 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 474 CCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATTTATGCCTACTCTCCTCAAAT 533 Query 556 TCCTGGAGTACGATTTCC-GGGTTTGACACACCCAGGAGTCATTGGCACCGCGCCATCGA 614 |||||||||||||||||| ||||| |||||| |||||| |||||||||| || ||||| | Sbjct 534 TCCTGGAGTACGATTTCCAGGGTT-GACACATCCAGGAATCATTGGCACTGCACCATCAA 592 Query 615 TGGAACTCCTGAGAATATGGAATGAAAGGGAAAGACAATTAGAAGAAAGTGGTCTCAAGT 674 |||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 593 AAGAACTCTTGAGAATATGGAATGAAAGGGAAAGACAATTAGAAGAAAAAGGTGTTGAGT 652 Query 675 CCCCAACACTATGTGAGGTTGTGCATCAACGGCCATTGGCAAACCTACCAACAGCTAAAG 734 ||| |||||||||||||||||||||||| |||||||| |||| |||||||||| |||||| Sbjct 653 CCCTAACACTATGTGAGGTTGTGCATCAGCGGCCATTAGCAAGCCTACCAACAACTAAAG 712 Query 735 GATGCCTCCTAGGGAACATTGAAGA-AGGAACACCAGAATGGGAAAGGATTGCTAACGAG 793 |||| || ||||| || |||||||| |||| || ||||||||||||| ||||| || ||| Sbjct 713 GATGTCTACTAGGAAATATTGAAGAGAGGA-CATCAGAATGGGAAAGAATTGCAAAGGAG 771 Query 794 GCTGCGAGGACGATACCAGGAAGAGAAAACGGAGGAAACTGTGACATTAAAAACCTAAGC 853 ||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 772 GCTGCTAGGACAATACCAGGAAGGGAAAATGGAGGAAACTGTGACATAAAAAACCTAAGC 831 Query 854 AGAGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGGGCTAATCTAAGCACAGGAGAC 913 || ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 832 AGTGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGAGCTAATCTAAGCACCGGTGAC 891 Query 914 ATGCATTTCTCGCAAGGTGATGGTGAGATCTCATTCTGTGGAGCCATCGAGATGAGTGGA 973 ||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 892 ATGCATTTCTCACAGGGTGATGGCGAGATCTCATTCTGTGGAGCCATAGAGATGAGTGGA 951 Query 974 TTTCTAGAACTCAAGTGTGAAATCATAAGGAATGGGATGCAAGAATACCTTACGCCAATG 1033 |||||||||||||||||||||||||| || || |||||||| || |||||||| |||||| Sbjct 952 TTTCTAGAACTCAAGTGTGAAATCATTAGAAACGGGATGCAGGAGTACCTTACACCAATG 1011 Query 1034 GGACCGACCCCGCTCCATGTAAACCCAATCTTTGAGATAGGGCCAGTTGAACCGAGATTC 1093 ||||| ||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||| Sbjct 1012 GGACCAACCACTCTCCACGTAAACCCGATCTTTGAGATAGGGCCAGTGGAACCAAGATTC 1071 Query 1094 TCAGAATGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGCGGGAGACAACATTACCTG 1153 ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1072 TCAGAGTGGCTTGTCTTCGAGGGTATCAGTGTCGATGAGAGCGGAAGACAACATTACCTA 1131 Query 1154 GATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATAGACTATCTCTTCAAATTT 1213 |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1132 GATGCAACAGTTGCATACAAACGAGCAGTTCTCAACGCTATAGACTATCTCTTCAAATTC 1191 Query 1214 GGTTACTCAAAAGAACAGGTGTACCTCTTGCTCTCATGTTGTCCATGTGAAGGAAGACTA 1273 |||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||| || Sbjct 1192 GGTTACTCAAAAGAACAGGTATATCTCTTACTCTCATGCTGTCCATGCGAAGGAAGAATA 1251 Query 1274 TCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCAATACCTACTGCCATCTTT 1333 || || ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1252 TCCGGTATAGTCGATTCTCCAAATGCCGTTGCTACACTTGCAATACCCACTGCCATCTTT 1311 Query 1334 GATCAGGATATTCGGCCAAAGACCCGAAAGGTTCCAGCAGGACCTCGGATAGTGAGGAAA 1393 |||||||||||||| |||||||||||||| |||||| ||||| |||||||||||| ||| Sbjct 1312 GATCAGGATATTCGTCCAAAGACCCGAAAAGTTCCAACAGGAGCTCGGATAGTGAAGAAG 1371 Query 1394 CCAGACGT-ACTGAAGAGCACATATGATGGAAAGCTTCCAATTACAAAGAATCCAAGTTC 1452 |||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1372 CCAGACGTTA-TGAAGAGCACATATGATGGAAAACTTCCAATTACAAAGAATTCAAGTTC 1430 Query 1453 TTCCTCTTAGCTTCTACAAAAA 1474 |||||||||||||||||||||| Sbjct 1431 TTCCTCTTAGCTTCTACAAAAA 1452 > AT4G37553.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT4G37550 and AT4G37560 | chr4:17644898-17649055 REVERSE LENGTH=773 Length=773 Score = 453 bits (245), Expect = 2e-126 Identities = 339/380 (89%), Gaps = 24/380 (6%) Strand=Plus/Minus Query 988 GTGTGAAATCATAAGGAATGGGATGCAAGAATACCTTACGCCAATGGGACCGACCCCGCT 1047 ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || Sbjct 686 GTGTGAAATCATAAGAAATGGGATGCAAGAGTACCTTACGCCAATGGGACCTACCCCTCT 627 Query 1048 CCATGTAAACCCAATCTTTGAGATAGGGCCAGTTGAACCGAGATTCTCAGAATGGCTTGT 1107 ||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct 626 CCATGTAAACCCAATCTTTGAGATAGGACCAGTGGAACCGAGGTTCTCAGAGTGGCTTGT 567 Query 1108 CTTCGAAGGTATCAGTGTCGATGAGAGCGGGAGACAACATTACCTGGATGCAACAGTTGC 1167 |||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||| Sbjct 566 CTTCGAAGGTATCAGTGTCGATGAGAGCGGAAAACAGCATTACCTAGATGCAACAGTTGC 507 Query 1168 TTACAAACGGGCAGTTCTCAACGCCATAGACTATCTCTTCAAATTTGGTTACTCAAAAGA 1227 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 506 TTACAAACGGGCAGTTCTCAACGCCATAGACTATCTTTTCAAATTTGGTTACTCAAAAGA 447 Query 1228 ACAGGT----GTA----C--CT--------CTTGC----T-CTCATGTTGTCCATGTGAA 1264 |||||| || | || ||| | | ||||||||||||||||||| Sbjct 446 ACAGGTACTTGTCTTTGCAGCTTGATGTTTCTTCCAGAATTCTCATGTTGTCCATGTGAA 387 Query 1265 GGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCAATACCTACT 1324 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 386 GGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTAGCAATACCTACA 327 Query 1325 GCCATCTTTGATCAGGATAT 1344 |||||||||||||||| ||| Sbjct 326 GCCATCTTTGATCAGG-TAT 308 Score = 148 bits (80), Expect = 1e-34 Identities = 86/89 (97%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1377 CTCGGATAGTGAGGAAACCAGACGTACTGAAGAGCACATATGATGGAAAGCTTCCAATTA 1436 ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 205 CTCGGGTTGTGAGGAAACCAGATGTACTGAAGAGCACATATGATGGAAAGCTTCCAATTA 146 Query 1437 CAAAGAATCCAAGTTCTTCCTCTTAGCTT 1465 ||||||||||||||||||||||||||||| Sbjct 145 CAAAGAATCCAAGTTCTTCCTCTTAGCTT 117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74196405510 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5