BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490868 Length=1856 Score E Sequences producing significant alignments: (Bits) Value AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr... 3083 0.0 AT2G48121.2 | Symbols: | LOCATED IN: mitochondrion; BEST Arabi... 697 0.0 > AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr4:17626104-17628947 REVERSE LENGTH=1862 Length=1862 Score = 3083 bits (1669), Expect = 0.0 Identities = 1801/1864 (97%), Gaps = 12/1864 (1%) Strand=Plus/Plus Query 1 CTGTTGCAAAAATCGTGTC-TTT--GTGTTCTCGAGTCGAGTTTGATGATTTGGTTTCTT 57 ||| ||||||||||||||| ||| ||||||||||||||| || |||||||| | ||||| Sbjct 1 CTGCTGCAAAAATCGTGTCTTTTGCGTGTTCTCGAGTCGAATTGGATGATTT-GATTCTT 59 Query 58 AATTTTTGTTTG--A-TAATAGTCTAAAGAAGCAATGGAGCTTTGTTCTTCATCTTCATC 114 |||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 60 AATTTTTGTTTGATAGTAACAGTCTAAAGAAGCAATGGAGCTTTGTTCTTCATCTCCATC 119 Query 115 ATCTTCTCTCCTTCGCATTTGTTCATCTTCAGCACCAGAAATCTCATTTTCTTCTTCAAT 174 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 TTCTTCTCTCCTTCGCATTTGTTCATCTTCAGCACCAGAAATCTCATTTTCATCTTCAAT 179 Query 175 TTCTCAGTTCCCATCTAAAACCCAATCGATTCTCACAAAACCCAGATTCCAAAATCTCCG 234 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 180 TTCTCAGTTCCCATCTAAAACCCAATCGATTCTCACAAAATCCAGATTCCAAAATCTCCG 239 Query 235 AATTTGCGCTTCCGTGGCGGCGGAGACTCAAGGTCTTCCACGAGACAGTCCTCAACGTCT 294 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 AATTTGCGCTTCCGTGACGGCGGAGACTCAAGGTCTTCCACGAGACAGCCCTCAACGTCT 299 Query 295 CCTCAAGGAGCTTGCGCAGCGTAAAACAGCGACAGGACCGAAGAAAAAGGTTCCTCCGAA 354 |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 CCTCAAAGAGCTAGCACAGCGTAAAACAGCGACAGGACCGAAGAAAAAGGTTCCTCCTAA 359 Query 355 ACGATTCATCTTAAGACCACCATTAGATGATAAGAAATTAGCTGAGAGATTCCTCAATAG 414 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 ACGATTCATCTTAAGGCCACCATTAGACGATAAGAAATTAGCTGAGAGATTCCTCAATAG 419 Query 415 TCCACAATTGTCTCTCAAGTCGTTTCCTTTACTCAGCTCTTGTCTTCCATCGTCAAAGCT 474 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 TCCACAATTGTCTCTGAAGTCGTTTCCTTTACTTAGCTCTTGTCTTCCATCGTCAAAGCT 479 Query 475 TAACAACGCTGATAAAACATGGATCGATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGG 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TAACAACGCTGATAAAACATGGATCGATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGG 539 Query 535 GTATTCTCTGGAGCCTTCAGAGAGTTTAGGAGATGATAATCCAGCGAAACACTTTGATAC 594 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 GTATTCTCTGGAACCTTCAGAGAGTTTAGGAGATGATAATCCGGCGAAACACTTTGATAC 599 Query 595 GTTGCTCTATCTTGCGTTCCAGCATCCGTCTTGTGATAGGGCACGTGCGAGGCATGTGAA 654 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 600 GTTGCTCTATCTTGCTTTCCAGCATCCGTCTTGTGATAGAGCACGTGCGAGGCATGTGAA 659 Query 655 GAATGGGCACTCGAGGCTTTGGTTTCTGGGTCAGTATGTGCTTGAGCTTGCTCTTACGGA 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GAATGGGCACTCGAGGCTTTGGTTTCTGGGTCAGTATGTGCTTGAGCTTGCTCTTACGGA 719 Query 715 GTTTTTCTTGCAGAGGTATCCGAGGGAATCTCCTGGACCTATGAGGGAGAGAGTGTTTGC 774 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 720 GTTTTTCTTGCAGAGGTATCCGAGGGAATCTCCGGGACCTATGAGGGAGAGAGTGTTTGC 779 Query 775 TTTGATTGGGAAGAGGTATCTCCCCAAATGGATTAAAGCAGCGAGCTTGCAAAATCTCAT 834 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 780 TTTGATTGGGAAGAGGTATCTCCCGAAATGGATTAAAGCAGCGAGCTTGCAAAATCTCAT 839 Query 835 CTTTCCTTATGATGATATGGATAAGTTGATTAGAAAAGAGCGTGAGCCACCGGTTAAATC 894 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 840 CTTTCCTTATGATGATATGGATAAGTTGATTAGGAAAGAGCGTGAGCCACCGGTTAAATC 899 Query 895 TGTGTTCTGGGCTTTGTTTGGTGCCATCTATCTATGCTATGGGATGCCGGAAGTGTATCG 954 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 900 TGTGTTCTGGGCTTTGTTTGGTGCCATCTATCTATGTTTTGGGATGCCGGAAGTGTATCG 959 Query 955 TGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAAGCAG 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAAGCAG 1019 Query 1015 GAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGCAAAAAGCTAGGTTG 1074 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1020 GAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGGAAAAAGCTAGGTTG 1079 Query 1075 GCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCAAGGCTATT 1134 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1080 GCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCTAGGCTATT 1139 Query 1135 CAGAGCTTGTGTTCCTCCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAG 1194 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CAGAGCTTGTGTTCCACCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAG 1199 Query 1195 CAAACCAAAAGTTATGCAGACCCTCGGATACCCCTTACCGATGAATGATAGAATCAAGGA 1254 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1200 CAAACCAAAAGTTATGCAGACCCTCGGATACCCTTTAACGATGAATGATAGAATCAAGGA 1259 Query 1255 GATAACTGAAGCAAGAAACATCGAACTTGGACTCGGGTTACAGCTCTGCTTCTTGCATCC 1314 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1260 GATAACTGAAGCAAGAAACATCGAACTTGGACTCGGTTTACAGCTCTGCTTCTTGCATCC 1319 Query 1315 TTCGAAGCATAAGTTTGAACACCCACGGTTTTGTTTTGAGCGGCTGGAATACGTAGGACA 1374 ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1320 TTCAAAGCATAAGTTTGAACACCCGCGGTTTTGTTTTGAGCGGCTGGAATATGTAGGACA 1379 Query 1375 GAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAATGAAGCACTTGGACGCACCAGG 1434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 GAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAATGAAGCACTTGGACGCACCAGG 1439 Query 1435 GAAGTGGTTGCAAGAGAAGCATCGGCGTCTATTAATGAACAAATTCTGCGGGCGGTATCT 1494 |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 1440 GAAGTGGTTGCAAGAGAAGCATAGACGTCTATTAATGAACAAATTCTGCGGCCGGTATCT 1499 Query 1495 GAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGAGGAGGTTCATGATCGGTATGA 1554 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGAGGAGGTTCATGATCGGTATGA 1559 Query 1555 ACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGTTCAACAAGCCATTCACGGCCT 1614 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1560 ACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGTCCAACAAGCCATTCACGGCCT 1619 Query 1615 CGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCTCATGTTTGAGGTTTTCGACTT 1674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 CGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCTCATGTTTGAGGTTTTCGACTT 1679 Query 1675 CGAACAAATCCAACCTAAAGCTGTGTGAAAATCAGA-G-TGTCTCTCTCATTTGTCTTAA 1732 |||||||||||||||||||||||| |||||||| || | |||||||||||||||||| || Sbjct 1680 CGAACAAATCCAACCTAAAGCTGTCTGAAAATC-GAAGCTGTCTCTCTCATTTGTCT-AA 1737 Query 1733 TGTCTTTTAGTATACTACTGGATATGATTTATGTAGTTAAATACTTCATTACCTTTTGGT 1792 ||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||| Sbjct 1738 TGTCTTTTAGTATACTACTGGGTTTGATTTATGTAGTTAAATGCTTAATTACCTTT-GGT 1796 Query 1793 GAAATGTTGAAAACTTGAAACTAGCAAAATGAGCTTCATAAGTATAATCTCAGGTTCATC 1852 |||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| Sbjct 1797 GAAAAGTTGAAAACTTTAAACTAGCAAAATGAGCTTCATCAGTATAATCTTAGGTTCATC 1856 Query 1853 AGTT 1856 |||| Sbjct 1857 AGTT 1860 > AT2G48121.2 | Symbols: | LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). | chr2:19681817-19682391 FORWARD LENGTH=479 Length=479 Score = 697 bits (377), Expect = 0.0 Identities = 444/473 (94%), Gaps = 18/473 (4%) Strand=Plus/Plus Query 1294 ACAGCTCTGCTTCTTGCATCCTTCGAAGCATAAGTTTGAACACCCACGGTTTTGTTTTGA 1353 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 23 ACAGCTCTGCTTCTTGCATCCTTCAAAGCATAAGTTTGAACACCCGCGGTTTTGTTTTGA 82 Query 1354 GCGGCTGGAATACGTAGGACAGAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAAT 1413 |||||||||||| ||||||||||||||||||||||||||||||||||||| | | | Sbjct 83 GCGGCTGGAATATGTAGGACAGAAGATACAGGACATAGCAATGGCTGAAC----G-T--T 135 Query 1414 GAAGCACTTGGACGCACCAGGGAAGTGGTTGCAAGAGAAGCATCGGCGTCTATTAATGAA 1473 |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 136 -------TTGGACGCACCAGGGAAGTGGTTGCAAGAGAAGCATAGATGTCTATTAATGAA 188 Query 1474 CAAATTCTGCGGGCGGTATCTGAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGA 1533 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 189 CAAATTCTGCGGCCGGTATCTTAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGA 248 Query 1534 GGAGGTTCATGATCGGTATGAACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGT 1593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 GGAGGTTCATGATCGGTATGAACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGT 308 Query 1594 TCAACAAGCCATTCACGGCCTCGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCT 1653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TCAACAAGCCATTCACGGCCTCGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCT 368 Query 1654 CATGTTTGAGGTTTTCGACTTCGAACAAATCCAACCTAAAGCTGTGTGAAAATCAGA-G- 1711 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | Sbjct 369 CATGTTTGAGGTTTTCGACTTCGAACAAATCCAACCTAAAGCTGTCTGAAAATC-GAAGC 427 Query 1712 TGTCTCTCTCATTTGTCTTAATGTCTTTTAGTATACTACTGGATATGATTTAT 1764 |||||||||||||||||| ||||||||||||||||||||||| | |||||||| Sbjct 428 TGTCTCTCTCATTTGTCT-AATGTCTTTTAGTATACTACTGGGTTTGATTTAT 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91866997350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5