BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490899 Length=1593 Score E Sequences producing significant alignments: (Bits) Value AT4G36920.1 | Symbols: AP2, FLO2, FL1 | Integrase-type DNA-bind... 2276 0.0 > AT4G36920.1 | Symbols: AP2, FLO2, FL1 | Integrase-type DNA-binding superfamily protein | chr4:17400847-17403332 FORWARD LENGTH=1642 Length=1642 Score = 2276 bits (1232), Expect = 0.0 Identities = 1487/1600 (93%), Gaps = 58/1600 (4%) Strand=Plus/Plus Query 1 CATT-AAtttttttttttAATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59 |||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATTAAAGTTTTTATTTT-ATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59 Query 60 TTTAGCTTCTAACCTTGAGGAGAATCAAACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 60 TTTAGCTTCTAACCTTGAGGAGAATCATACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119 Query 120 CAAAATCAAGAAAACaaaaaaaaaaaaaaaaaaTGTGGGATCTAAACGACGCACCACACC 179 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 120 CAAAATCAAGAAACCAAAAAAAAACAAAAAAAATGTGGGATCTAAACGACGCACCACACC 179 Query 180 AAACACTTAGAGAAGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 239 |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AAACAC--AAAG-AGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 236 Query 240 TCGGATCTTTCTCTAATTCAAGTTCCTCTGCTGTTGTCATCGAAGATGGATCCGATGACG 299 | |||||||||||||||||||| || || |||||||| |||||||||||||||||||||| Sbjct 237 TTGGATCTTTCTCTAATTCAAGCTCTTCAGCTGTTGTTATCGAAGATGGATCCGATGACG 296 Query 300 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTATCACCCATCAGTTCTTCCCTGAGA 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 297 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTGTCACCCATCAGTTCTTCCCTGAGA 356 Query 360 TGGATTCTAACGGCGGTGGAGGAGATGGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 419 |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 357 TGGATTCTAACGGC------------GGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 404 Query 420 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCGGCGGGTAAAGCTG 479 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 405 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCCGCGGGTAAAGCTA 464 Query 480 CCACCGTAGCCGCTGCCGTGGTGGAGCCGGCGCAGCCGTTGAAAAAGAGCCGGCGTGGAC 539 ||| ||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| Sbjct 465 CCAACGTTGCCGCTGCCGTAGTGGAGCCGGCACAGCCGTTGAAAAAGAGTCGGCGTGGAC 524 Query 540 CAAGGTCAAGAAGTTCTCAGTATAGAGGCGTTACGTTTTACCGGCGTACTGGAAGATGGG 599 |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 525 CAAGATCAAGAAGTTCTCAGTATAGAGGTGTTACGTTTTACCGGCGTACCGGAAGATGGG 584 Query 600 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 644 Query 660 CAGCTGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 719 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 CAGCAGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 704 Query 720 ATTTCAACATCGAAGATTATGATGATGACTTGAAACAGATGACCAATTTAACCAAGGAAG 779 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 705 ATTTCAACATCGACGATTATGATGATGACTTGAAACAGATGACTAATTTAACCAAGGAAG 764 Query 780 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCTAAGTATA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 765 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCGAAGTATA 824 Query 840 GAGGTGTTACTTTGCATAAGTGTGGTCGATGGGAAGCTCGAATGGGTCAATTCTTAGGCA 899 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 825 GAGGTGTCACTTTGCATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCA 884 Query 900 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 944 Query 960 AAGCTGCAATCAAATGTAATGGCAAAGACGCCGTGACTAACTTTGATCCGAGTATTTACG 1019 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 945 AAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACG 1004 Query 1020 ACGAGGAACTCAATGCTGAGTCATCAGGGAATCCTACT-C-C-ACAAGATCACAACCTCG 1076 | |||||||||||||| ||||||||||||||||||||| | | ||||||||||||||||| Sbjct 1005 ATGAGGAACTCAATGCCGAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCG 1064 Query 1077 ATTTGAGTTTGGGAAATTCGGCTAATTCGAAGCATAAGAGTCAAGATATGCGGCTCAAGA 1136 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1065 ATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAGGA 1124 Query 1137 TGACCCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTCGGATTAGGTCAAACCG 1196 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1125 TGAACCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTTGGATTAGGTCAAACCG 1184 Query 1197 GAATGCTTAACCA-A-T-----TT-----------T--C-GGGCAGCAGCAGCATTGGTG 1235 ||||||||||||| | | || | | ||||||||||| ||||||| Sbjct 1185 GAATGCTTAACCATACTCCCAATTCAAACCACCAATTTCCGGGCAGCAGCAACATTGGTA 1244 Query 1236 GCGGAGGCGGATTCTCACTGTTTCCGGTGGCTGAGAACCACCGGTTTGATGATCGGGCCA 1295 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1245 GCGGAGGCGGATTCTCACTGTTTCCGGCGGCTGAGAACCACCGGTTTGATGGTCGGGCCT 1304 Query 1296 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCATA 1355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1305 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCACA 1364 Query 1356 ATCAGATTTTTAATTCTACTTCTTCTTCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1415 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1365 ATCAGATTTTTAATTCTACTTCTACTCCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1424 Query 1416 AACCTCCTCTCATGAGACCTTCTTGAATCTTT-AT-T----A---TT-AT-AT-ATA-A- 1461 |||||||||||||||||||||||||||||||| || | | || || || ||| | Sbjct 1425 AACCTCCTCTCATGAGACCTTCTTGAATCTTTTATATTTTTAAGGTTTATTATTATATAA 1484 Query 1462 GaaaaaaaaaaaTGAACCTTTGAA-TCTCCCATATTTTCTTGGTCATTCCATTAATCGTC 1520 |||||| ||||||||||||||||| || |||| || |||||||||||| |||||||| || Sbjct 1485 GAAAAACAAAAATGAACCTTTGAAATC-CCCACATGTTCTTGGTCATTTCATTAATCATC 1543 Query 1521 GGCTTATCTTTTGTTTATTG-CCCTTAAAACCTCTTGTTA 1559 ||||||| ||||| ||||| ||| |||| |||||||||| Sbjct 1544 GGCTTATATTTTGCTTATTTTCCCCTAAATCCTCTTGTTA 1583 Score = 62.1 bits (33), Expect = 2e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1561 AAAAATTAATGGAAATCTTTTTCCCTCCATCGG 1593 ||||||||||||||||||||||||||||||||| Sbjct 1599 AAAAATTAATGGAAATCTTTTTCCCTCCATCGG 1631 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78664254015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5