BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490906
Length=2065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36980.4 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2318 0.0
> AT4G36980.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147). | chr4:17433601-17437065 REVERSE
LENGTH=1984
Length=1984
Score = 2318 bits (1255), Expect = 0.0
Identities = 1450/1543 (94%), Gaps = 17/1543 (1%)
Strand=Plus/Plus
Query 1 AGCTAATTAGGGTTTCTTCTGAGCTAAGAGACCAAGGAGGTGAGAACAAGATGTGGCACG 60
||||||||||||||||||||||||| ||||| | | | | | |||||||||||||||
Sbjct 12 AGCTAATTAGGGTTTCTTCTGAGCTTAGAGAGC-A--A---G-G-ACAAGATGTGGCACG 63
Query 61 AAGCGAGAAGATCGGAGAAGAAGGTGCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 64 AAGCGAGAAGATCGGAGAAGAAGGTTCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 123
Query 121 AGCGGCGAGCTATTTACTTGGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGCGGCGAGCTATTTACTTAGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 183
Query 181 TTGGTTCTCGCTACCGAATCTTCCGCGATGATGGTCTTTACCAAGCCACCGAGGATCAAC 240
||||||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||||
Sbjct 184 TTGGTTCCCGCTACCGAGTATTCCGTGATGATGGTCTTTACCAAGCCACCGAAGATCAAC 243
Query 241 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 303
Query 301 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAACATACGTCCACATAAGAAAACGG 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAGTGTACGTCCACATAAGAAAACGG 363
Query 361 AAGAGGAGGAAGAACTTGATGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 420
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AAGAGGAAGAAGAACTTGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 423
Query 421 ATCGCCGTAGAGGATTTTCTGATGAGGAGGGTTTGCTTCATGTCCATCAAGAGCACGAGG 480
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 424 ATCGGCGTAGAGGATTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGG 483
Query 481 CCAAACTTGCTGCTCCCTTCCCAGGGGCTAGATCACAGGCAGCTCAACCACCTGCAAACA 540
||||||||||||||||||||| ||| | ||| |||| |||||||||||||||||||||
Sbjct 484 CCAAACTTGCTGCTCCCTTCCTTGGGACAAGAACACAACCAGCTCAACCACCTGCAAACA 543
Query 541 AAGGCACATATTCGCAGGTTGGATTTTCTTATACTGGAAACGGAAAAGATAATTCATTGG 600
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 544 AAGGCACATATTCGCAGGTTGGATTTTCTTATGCTGGAAATGGCAAAGATAATTCATTGG 603
Query 601 ATGCAGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATGCGGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 663
Query 661 ACAGTAATGACAGCGATGATGAAGGAATGGAAACAATTGCAAAACAGTTTGGCGTTAAGC 720
||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 664 ACAGTAATGACAGTGATGATGAAGGAATGGAAACAATTGCGAAACAGTTTGGTATTAAGC 723
Query 721 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAGAAGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAAAAGG 783
Query 781 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAAAGAAGAAAAGTTT 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 784 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAGAGAAGAAAAGTTT 843
Query 841 CTAGGATAGAGAGGGATAGGGAAAGAGAAACTTCAAGGAGTGTTGGAAGGCAAATAATTC 900
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 844 CTAGGATAGAGAGGGATAGAGAAAGGGAAACTTCAAGGAGTGTCGGAAGGCAAATAATTC 903
Query 901 ATCATGATCCTTACAGGGAGTCCCGAAGGAGTCCTACTTATGAGGCTTATCCGCGTTCAA 960
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 904 ATCATGATCCATACAGGGAGTCTCGAAGGAGTCCTACTTATGAGGCCTATCCGCGTTCAA 963
Query 961 GAAGATCAAGATCCAGATCCCGGTCGTATTCTCCATCATACTCACGGCGGAATGGGCGTG 1020
|||||||||||||||||||||| || |||||||||||||||||| || | ||||||||||
Sbjct 964 GAAGATCAAGATCCAGATCCCGCTCATATTCTCCATCATACTCAAGGAGAAATGGGCGTG 1023
Query 1021 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACAGAATTTGGAGGAG 1080
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1024 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACGGAATTTGGAGGAG 1083
Query 1081 GCTCTGGAGATGTGGGAAGTCTGAAGTTCGAAGGATATTCCCCACCGCATTCACCACCAT 1140
||||||||||| || |||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 1084 GCTCTGGAGATATGAGAAGTCCAAAGTTTGAAGGATATTCCCCACCGCGTTCACCACCAT 1143
Query 1141 CTCAGTCTGACCTATTGAGCCGACCATCGCCGGGCCATATTCTTGAGGCGTTGCATGTTG 1200
|||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1144 CTCAGTCTGATCTATTAAGCCGACCATCGCCAGGCCGTATTCTTGAGGCGCTGCATGTTG 1203
Query 1201 ATCCTGCATCTGGTGTATCTCTTGAGAAAGACAA-GATTGTTAAAACAGTTAAACCAACA 1259
|||||||||||| | |||| |||||||||||||| | ||| ||| ||| ||| | |||
Sbjct 1204 ATCCTGCATCTGATATATCCCTTGAGAAAGACAAAG-TTGCCAAACCAGCAAAATCGACA 1262
Query 1260 GTGAGTACTTCCACGGCACTAGCGAAGCTTTCAAAAG---CAGGTACCTCCTCTTCGAAG 1316
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1263 GTGAGTACTTCCACAGCACTAGCGAAGCTTTCAAAAGTAGCAGGTACCTCCTCTTCGAAG 1322
Query 1317 CAGACACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CAGTCACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1382
Query 1377 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAGACTGCTAAGAAACGAGAACAG 1436
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1383 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAAACGGCTAAGAAACGAGAACAG 1442
Query 1437 GAGCGGCAAAGGCTGGAGAAAATTGCGGAAACAAGCCGGTTAAGTCG-AAGTAGGCATCG 1495
||||| ||||||||||||||| | ||||||||||||||||||||||| || |||||| ||
Sbjct 1443 GAGCGACAAAGGCTGGAGAAACTAGCGGAAACAAGCCGGTTAAGTCGGAA-TAGGCAGCG 1501
Query 1496 CAGCCGTAGTAGGAGTTAT-AGTCGATCACCACCACCGAGGTT 1537
|||||||||||||||| || |||||||||||||||||||||||
Sbjct 1502 CAGCCGTAGTAGGAGT-ATTAGTCGATCACCACCACCGAGGTT 1543
Score = 315 bits (170), Expect = 1e-84
Identities = 257/297 (87%), Gaps = 14/297 (5%)
Strand=Plus/Plus
Query 1713 AAGACACAGGCGAAGCAGAAGCAGAAGCCGAAGCAGAAGCAGGAGATCGCGTAGGCACAG 1772
|||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 1544 AAGACACAGGCGAAGCAGAAGCAGAAGCGGAAGCAGGAGCAGGAGATCACGCAGGCACAG 1603
Query 1773 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGGTCTCCCAAACGCTCACG 1832
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1604 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGCTCTCCGAAACGCTCACG 1663
Query 1833 CAAACGCTCTCCATCTTATTCAAGGTCTCCCAGGCAAAGAAGAAGCAGGACAAGGCACTG 1892
|| |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||
Sbjct 1664 CAGACGCTCTCCATCTTATTCGAGGTCTCCCAGGCGAAGAAGCAGCAGGTCAAGGCACTG 1723
Query 1893 AAGGGAGGACACTCTTATTGTTGCCTCTTTTTATGTTTTTGCTT-CCACTGGt--ttttt 1949
||| ||||| ||||| |||||||| | || | |||| | || || ||| | |||||
Sbjct 1724 AAGAGAGGAAACTCTAATTGTTGCGGCAGCTT-T-TTTT-G-TTGCCTCTGTTCATTTTT 1779
Query 1950 ttttttttt-tGTGTGTTTTACTTGATA-TATA--ATCCAGTGGTAAATTGTGGTTT 2002
||||||||| |||||||||| | | || | || || |||||||||| | ||||||
Sbjct 1780 TTTTTTTTTCTGTGTGTTTT-CGT-ATCCT-TACGATTCAGTGGTAAAATATGGTTT 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102358911255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5