BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490909 Length=1655 Score E Sequences producing significant alignments: (Bits) Value AT4G36988.1 | Symbols: CPuORF49 | conserved peptide upstream op... 1742 0.0 AT4G36990.1 | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat sho... 1742 0.0 > AT4G36988.1 | Symbols: CPuORF49 | conserved peptide upstream open reading frame 49 | chr4:17440177-17442151 FORWARD LENGTH=1783 Length=1783 Score = 1742 bits (943), Expect = 0.0 Identities = 1156/1252 (92%), Gaps = 42/1252 (3%) Strand=Plus/Plus Query 109 AAATAACACTTAACTAGTTTATATA--TTTTAATCACACGGATTAGCTCCGGCGAATTAT 166 ||| || |||| | || ||||| || ||||||||||||||||||||||||||||| ||| Sbjct 163 AAAAAAGACTTTA-TA-TTTATTTACTTTTTAATCACACGGATTAGCTCCGGCGAAGTAT 220 Query 167 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 280 Query 227 ACGAAACTCCGATCTCCTCCGTTCTCGTGTTTTTCTCTCTGGCTTTTATTGCTGGGATTG 286 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 281 ACGAAACTCCGATCTTCTCCGTTCTCGTGTTTTCCTCTCTGGCTTTTATTGCTGGGATTG 340 Query 287 GGAATTTCTCACCGCTCTCTTGCTCTTTAGTTGCTAAATCTTTTTCATTTCCAAtctttc 346 |||||||||||||||||||||||| |||||||||| | |||||||| || | | ||||| Sbjct 341 GGAATTTCTCACCGCTCTCTTGCTTTTTAGTTGCTGATTCTTTTTC-CTT-CGA-CTTTC 397 Query 347 ---tt-c-ttc-ttcttcttctcttTTGTGT-TTAGATTATTTTTAGTTTTa-------- 391 || | || ||||||||||| ||||||| |||||||||||||||||||| Sbjct 398 TATTTCCAATCTTTCTTCTTCTC-TTTGTGTATTAGATTATTTTTAGTTTTATTTTTCTG 456 Query 392 --aaaaaat-aaaaaaGATCGCCGGAGATGACGGCGGTGACGGCGGCGCAAAGATCTGTA 448 ||||| ||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 457 TGGTAAAATAAAAAAAGTTCGCCGGAGATGACGGCTGTGACGGCGGCGCAAAGATCAGTT 516 Query 449 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTGGATGATCATAACACAGACGACGTC 508 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 517 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTC 576 Query 509 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTGGTGTGGAAAACAGCAGAGTTTGCTAAA 568 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 577 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAA 636 Query 569 GATCTTCTTCCTCAATACTTCAAGCATAACAATTTCTCAAGCTTCATTCGTCAGCTCAAC 628 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 637 GATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAAC 696 Query 629 ACTTACGGATTTCGGAAAACTGTACCGGATAAATGGGAATTCGCGAACGATTATTTCCGG 688 |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 697 ACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGG 756 Query 689 AGAGGCGGAGAGGATCTGTTGTCGGAGATAAGACGGCGTAAAGCGGTGATTGCCTCAACG 748 |||||||| |||||||||||| |||| ||| ||||||||||| |||||||||| |||||| Sbjct 757 AGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACG 816 Query 749 GCGGGGAAATGTGTTGTTGTTGGTTCGCCGTCTGAGTCAAATTC---TGGTGGTGATGAT 805 ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 817 GCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGAT 876 Query 806 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTTGAGAAC 865 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 877 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAAC 936 Query 866 ATGGTTGCTGATTTATCAGGTGAGAACGAGAAGCTGAAACGTGAAAATAATAACTTGAGC 925 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 937 ATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGC 996 Query 926 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGTGATGAGCTAGTGACGTTCTTGACGGGTCAT 985 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 997 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCAT 1056 Query 986 CTGAAAGTCAGACCGGAGCAAATCGATCAGATGATCAAAGGAGGGAAATTCAAACCGGTT 1045 |||||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||| Sbjct 1057 CTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTG 1116 Query 1046 GAATCGGACGAAGAGAGTGAATGCGAAGGTT--G-CGGCGGCGGAGGAGCAGAGGAGGGG 1102 || || |||||||||||||| |||||||||| | ||||||||||||||||||||||||| Sbjct 1117 GAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGG 1176 Query 1103 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1236 Query 1163 CGGGATGAAAA-ACATTATTTGGTGGGTGGGTCCGGTATGACGGAAATAAAGAACGTGGA 1221 ||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 1237 CGGGATGAAAAGA-ATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGA 1295 Query 1222 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTTTGCAACTAAAAAA-GAGTAGAAGACT 1280 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1296 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTAAAAAAAGAGTAGAAGACT 1355 Query 1281 GTTCAAACTTCAAACCATCGTGTGACACGTCATCGACGAAGACGaaaaaaaT 1332 |||||||| || | |||||||||||||||||||| |||||||||||| Sbjct 1356 GTTCAAAC--CAG-C----GTGTGACACGTCATCGACGACGACGAAAAAAAT 1400 Score = 139 bits (75), Expect = 8e-32 Identities = 102/114 (89%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 1546 tttatttttgatttattttctttGC-A--AGTAGTAGGTGATTTCCGTGTTTTTACGTAA 1602 ||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||||||| Sbjct 1667 TTTATGTTTGATTGATTTTCTTTGCAAGTAGTAGTAGGTGGTTTCCGTGTTTTTACGTAA 1726 Query 1603 TCCGTTGAATATTTT-CCATCAAAATTGTCTTTGAAAAAAGTCACAAAAACATT 1655 ||||||||||||||| || || ||||||||||| | |||||||||| ||||||| Sbjct 1727 TCCGTTGAATATTTTTCCCTCGAAATTGTCTTT-ATAAAAGTCACAGAAACATT 1779 Score = 65.8 bits (35), Expect = 1e-09 Identities = 45/49 (92%), Gaps = 3/49 (6%) Strand=Plus/Plus Query 1352 GTTATT-AAAA-GTGAAGAAGGTCCAGAAGGATCAACGCAAATATTTAA 1398 ||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1448 GTT-TTAAAAAGGTGAAGAAGGTCCAGAAGGATCAACGCAAATATATAA 1495 > AT4G36990.1 | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat shock factor 4 | chr4:17440177-17442151 FORWARD LENGTH=1783 Length=1783 Score = 1742 bits (943), Expect = 0.0 Identities = 1156/1252 (92%), Gaps = 42/1252 (3%) Strand=Plus/Plus Query 109 AAATAACACTTAACTAGTTTATATA--TTTTAATCACACGGATTAGCTCCGGCGAATTAT 166 ||| || |||| | || ||||| || ||||||||||||||||||||||||||||| ||| Sbjct 163 AAAAAAGACTTTA-TA-TTTATTTACTTTTTAATCACACGGATTAGCTCCGGCGAAGTAT 220 Query 167 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 280 Query 227 ACGAAACTCCGATCTCCTCCGTTCTCGTGTTTTTCTCTCTGGCTTTTATTGCTGGGATTG 286 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 281 ACGAAACTCCGATCTTCTCCGTTCTCGTGTTTTCCTCTCTGGCTTTTATTGCTGGGATTG 340 Query 287 GGAATTTCTCACCGCTCTCTTGCTCTTTAGTTGCTAAATCTTTTTCATTTCCAAtctttc 346 |||||||||||||||||||||||| |||||||||| | |||||||| || | | ||||| Sbjct 341 GGAATTTCTCACCGCTCTCTTGCTTTTTAGTTGCTGATTCTTTTTC-CTT-CGA-CTTTC 397 Query 347 ---tt-c-ttc-ttcttcttctcttTTGTGT-TTAGATTATTTTTAGTTTTa-------- 391 || | || ||||||||||| ||||||| |||||||||||||||||||| Sbjct 398 TATTTCCAATCTTTCTTCTTCTC-TTTGTGTATTAGATTATTTTTAGTTTTATTTTTCTG 456 Query 392 --aaaaaat-aaaaaaGATCGCCGGAGATGACGGCGGTGACGGCGGCGCAAAGATCTGTA 448 ||||| ||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 457 TGGTAAAATAAAAAAAGTTCGCCGGAGATGACGGCTGTGACGGCGGCGCAAAGATCAGTT 516 Query 449 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTGGATGATCATAACACAGACGACGTC 508 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 517 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTC 576 Query 509 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTGGTGTGGAAAACAGCAGAGTTTGCTAAA 568 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 577 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAA 636 Query 569 GATCTTCTTCCTCAATACTTCAAGCATAACAATTTCTCAAGCTTCATTCGTCAGCTCAAC 628 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 637 GATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAAC 696 Query 629 ACTTACGGATTTCGGAAAACTGTACCGGATAAATGGGAATTCGCGAACGATTATTTCCGG 688 |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 697 ACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGG 756 Query 689 AGAGGCGGAGAGGATCTGTTGTCGGAGATAAGACGGCGTAAAGCGGTGATTGCCTCAACG 748 |||||||| |||||||||||| |||| ||| ||||||||||| |||||||||| |||||| Sbjct 757 AGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACG 816 Query 749 GCGGGGAAATGTGTTGTTGTTGGTTCGCCGTCTGAGTCAAATTC---TGGTGGTGATGAT 805 ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 817 GCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGAT 876 Query 806 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTTGAGAAC 865 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 877 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAAC 936 Query 866 ATGGTTGCTGATTTATCAGGTGAGAACGAGAAGCTGAAACGTGAAAATAATAACTTGAGC 925 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 937 ATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGC 996 Query 926 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGTGATGAGCTAGTGACGTTCTTGACGGGTCAT 985 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 997 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCAT 1056 Query 986 CTGAAAGTCAGACCGGAGCAAATCGATCAGATGATCAAAGGAGGGAAATTCAAACCGGTT 1045 |||||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||| Sbjct 1057 CTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTG 1116 Query 1046 GAATCGGACGAAGAGAGTGAATGCGAAGGTT--G-CGGCGGCGGAGGAGCAGAGGAGGGG 1102 || || |||||||||||||| |||||||||| | ||||||||||||||||||||||||| Sbjct 1117 GAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGG 1176 Query 1103 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1236 Query 1163 CGGGATGAAAA-ACATTATTTGGTGGGTGGGTCCGGTATGACGGAAATAAAGAACGTGGA 1221 ||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 1237 CGGGATGAAAAGA-ATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGA 1295 Query 1222 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTTTGCAACTAAAAAA-GAGTAGAAGACT 1280 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1296 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTAAAAAAAGAGTAGAAGACT 1355 Query 1281 GTTCAAACTTCAAACCATCGTGTGACACGTCATCGACGAAGACGaaaaaaaT 1332 |||||||| || | |||||||||||||||||||| |||||||||||| Sbjct 1356 GTTCAAAC--CAG-C----GTGTGACACGTCATCGACGACGACGAAAAAAAT 1400 Score = 139 bits (75), Expect = 8e-32 Identities = 102/114 (89%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 1546 tttatttttgatttattttctttGC-A--AGTAGTAGGTGATTTCCGTGTTTTTACGTAA 1602 ||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||||||| Sbjct 1667 TTTATGTTTGATTGATTTTCTTTGCAAGTAGTAGTAGGTGGTTTCCGTGTTTTTACGTAA 1726 Query 1603 TCCGTTGAATATTTT-CCATCAAAATTGTCTTTGAAAAAAGTCACAAAAACATT 1655 ||||||||||||||| || || ||||||||||| | |||||||||| ||||||| Sbjct 1727 TCCGTTGAATATTTTTCCCTCGAAATTGTCTTT-ATAAAAGTCACAGAAACATT 1779 Score = 65.8 bits (35), Expect = 1e-09 Identities = 45/49 (92%), Gaps = 3/49 (6%) Strand=Plus/Plus Query 1352 GTTATT-AAAA-GTGAAGAAGGTCCAGAAGGATCAACGCAAATATTTAA 1398 ||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1448 GTT-TTAAAAAGGTGAAGAAGGTCCAGAAGGATCAACGCAAATATATAA 1495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81776687805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5