BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490936
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37180.2 | Symbols: | Homeodomain-like superfamily protein ... 2006 0.0
AT1G49560.1 | Symbols: | Homeodomain-like superfamily protein ... 73.1 7e-12
> AT4G37180.2 | Symbols: | Homeodomain-like superfamily protein
| chr4:17504564-17506367 FORWARD LENGTH=1436
Length=1436
Score = 2006 bits (1086), Expect = 0.0
Identities = 1321/1425 (93%), Gaps = 53/1425 (4%)
Strand=Plus/Plus
Query 2 TCTTCTTCTATATATACGTCTTTAAGC-TGCTTCTCTTTGTCTTTATCTTGTCCGTTTAT 60
||||||||||||||||| ||||||||| |||||||||||||||||||| | | | |
Sbjct 30 TCTTCTTCTATATATACCTCTTTAAGCTTGCTTCTCTTTGTCTTTATC-T-T--G----T 81
Query 61 CCGAATGGTTCAAACAGAAACAGATCAAAGGATGGGTCTTAATCTGAATTTGTCTATCTA 120
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCG-ATGGTTCAAACAGAAACCGATCAAAGGATGGGTCTTAATCTGAATTTGTCTATCTA 140
Query 121 CTCTTTACCAAAACCCTTATCTCAATTTCTCGATCAAGTGTCGAGGATCAAAGACAATCA 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 141 CTCTTTACCAAAACCCTTATCTCAATTTCTCGATGAAGTGTCGAGGATCAAAGACAATCA 200
Query 181 TTCGAAACTGTCTGAAATCGATGGTTATGTCGGGAAATTAGAGGAAGAGAGaaaaaaaaT 240
||| ||||||||||||||||||||||||||||| |||||||||||||| || || |||||
Sbjct 201 TTCCAAACTGTCTGAAATCGATGGTTATGTCGGAAAATTAGAGGAAGAAAGGAACAAAAT 260
Query 241 CGATGTTTTTAGAA-GAGAACTCCCTTTATGCATGCTCTTATTGAACGAAGAAATTGTTT 299
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 261 CGATGTTTTTA-AACGAGAACTCCCTTTATGCATGCTCTTATTGAACGAAGAGATTGTTT 319
Query 300 TTCTCTGTGTAGCGATTGAGGCGTTGAATGAAGAGGCTAGAAAAGGGTCATCAGTGATGG 359
|||||||||||||||||| ||||||||| || |||||||||||||||| |||| ||||||
Sbjct 320 TTCTCTGTGTAGCGATTGGGGCGTTGAAGGATGAGGCTAGAAAAGGGTTATCACTGATGG 379
Query 360 CATCAAATGGGAAATTCGATGAACG-TGAAGGGGCAAAACCGGAAACTGATAAGAAGAGC 418
|||| |||||||||||||||| | | |||| |||||||||||||||||||||||||||||
Sbjct 380 CATCTAATGGGAAATTCGATG-ATGTTGAAAGGGCAAAACCGGAAACTGATAAGAAGAGC 438
Query 419 TGGATGAGCTCTGCCCAGTTATGGATCTCGAACCCTAATTCTCAATTGCAATCGAC-AA- 476
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||
Sbjct 439 TGGATGAGCTCTGCCCAGTTATGGATCTCGAACCCTAATTCCCAATTCCGATCGACAAAT 498
Query 477 -ACGAAGAAGAAGATCGGTGTGTGAGTCAGAACCCATTTCAGACATG---------TAAT 526
| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 499 GAAGAAGAAGAAGATCGGTGTGTGAGTCAGAACCCATTTCAGACATGTAATTACCCTAAT 558
Query 527 CAAGGAGGGGCATTTCTGCCATTTAACCCTCCTCCACCTCCTCCACCACCAGCTCCTCTG 586
|||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 559 CAAGGAGGGGTATTTATGCCATTTAACCGTCCCCCACCTCCTCCACCACCAGCTCCTCTG 618
Query 587 TCTCTCATGACTCCAACATCAGACATGATGATGGATTGTAGCAGAATTGAGCAGAatcat 646
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 619 TCTCTCATGACTCCAACATCAGAGATGATGATGGATTATAGCAGAATTGAGCAGAGTCAT 678
Query 647 catcatcatcatcaGTTCAACAAACCTTCTTCACAGAGTCATCACATTCAGAAGAAAGAG 706
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 679 CATCATCATCA--A-TTCAATAAACCTTCTTCACAGAGTCATCACATTCAGAAGAAAGAG 735
Query 707 CAGAGAAGGAGATGGTCACAGGAACTTCACCGTAAATTCGTTGATGCTCTTCACAGGCTT 766
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 736 CAGAGAAGGAGATGGTCACAGGAACTTCACCGTAAATTTGTTGATGCTCTTCATAGGCTT 795
Query 767 GGAGGGCCACAAGTGGCTACACCAAAGCAGATTAGAGATTTGATGAAAGTTGATGGTTTA 826
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GGAGGGCCACAAGTTGCTACACCAAAGCAGATTAGAGATTTGATGAAAGTTGATGGTTTA 855
Query 827 ACCAATGATGAAGTCAAGAGTCATTTACAAAAATATAGAATGCATATCCGTAAGCATCCA 886
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 856 ACCAATGATGAAGTCAAGAGCCATTTACAAAAATATAGAATGCATATCCGTAAGCATCCG 915
Query 887 CTGCATCCGACAAAGACTTTGTCATCGTCGGATCAGCCCGGTGTGTTGTCAGAGAGAGAA 946
|||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 916 CTGCATCCGACAAAGACTTTGTCATCGTCGGATCAGCCAGGTGTG-T-T-AGAGAGAGAA 972
Query 947 TCGCAGAGCTTAATAAGTTTGTCGAGGTCGGATTCGCCACAAAGCCCACTTGTTGCAAGA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TCGCAGAGCTTAATAAGTTTGTCGAGGTCGGATTCGCCACAAAGCCCACTTGTTGCAAGA 1032
Query 1007 GGGTTGTTCAGTAGTAATGTTGGTCATAGCTCagaggaagatgaggaggaggatgaagaa 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1033 GGGTTGTTCAGTAGTAATGTTGGTCATAGCTCAGAGGAAGATGAGGAGGAGGAGGATGAA 1092
Query 1067 gaggaggagaaATCTGATGGACGTAGTAGCTGTAGAAATGATGAAACAAAGAAGAAGAGA 1126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GAGGAGGAGAAGTCTGATGGACGTAGTAGCTGTAGAAATGATGAAACAAAGAAGAAGAGA 1152
Query 1127 CAAGTGTTGGATCTTGAGCTTTGAAAGTCGGCATAGTGAAGGATATAATCAT-ACCAACT 1185
||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||
Sbjct 1153 CAAGTGTTGGATCTTGAGCTTTGAAAGTCTGCATAGTGAATGATATAATCTTTACCAACT 1212
Query 1186 TATGTTATATATGCTCAAAACTT-GAGTTTGTTCGGGAGTTTTTGTAGATGTAAACATGA 1244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1213 TATGTTATATATGCTCAAAACTTTGAGTTTGTTCGGGAGTTTTTGTAGATGTAAACATGA 1272
Query 1245 GAGTTGAAATAAGGAAGAGG-tttt----------t----ttt-tttttGCAAGAGGAAA 1288
|||||||||||||||||||| |||| | ||| ||||||||||||||||
Sbjct 1273 GAGTTGAAATAAGGAAGAGGATTTTGAGCAAAAAGTAGGGTTTGTTTTTGCAAGAGGAAA 1332
Query 1289 TAGATAGAAGA-GAGTGATCAAAATCCTCTG-GTTTGTGtttttgtttttttGTTACTTC 1346
|||||||| || ||||| || |||||||||| |||| | ||||| ||||||| |||||||
Sbjct 1333 TAGATAGA-GAAGAGTGTTCGAAATCCTCTGTGTTTTTTTTTTTTTTTTTTTTTTACTTC 1391
Query 1347 ATAAGAAAGGTAAACTCAAATATCAAAGATTTTGtttttttACTT 1391
||||| ||| |||||||| |||||||||||||||||||| |||||
Sbjct 1392 ATAAGTAAGATAAACTCATATATCAAAGATTTTGTTTTTATACTT 1436
> AT1G49560.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:18342554-18344363 FORWARD LENGTH=1435
Length=1435
Score = 73.1 bits (39), Expect = 7e-12
Identities = 71/86 (83%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 778 AGTGGCTACACC-AAAGCAGATTAGAG-ATTTGATGAAAGTTGATGGTTTAACCAATGAT 835
|||||| || || ||| || ||||||| | | ||| ||| || || ||||||||||||
Sbjct 819 AGTGGCAACTCCTAAA-CAAATTAGAGAACAT-ATGCAAGAAGAAGGCTTAACCAATGAT 876
Query 836 GAAGTCAAGAGTCATTTACAAAAATA 861
|||||||||||||||||||| |||||
Sbjct 877 GAAGTCAAGAGTCATTTACAGAAATA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5