BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490939
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37200.1 | Symbols: HCF164 | Thioredoxin superfamily protein... 1476 0.0
AT4G37190.1 | Symbols: | LOCATED IN: cytosol, plasma membrane;... 58.4 1e-07
> AT4G37200.1 | Symbols: HCF164 | Thioredoxin superfamily protein
| chr4:17509621-17511364 REVERSE LENGTH=1135
Length=1135
Score = 1476 bits (799), Expect = 0.0
Identities = 962/1036 (93%), Gaps = 30/1036 (3%)
Strand=Plus/Plus
Query 1 TAACAAAAAACGTGTGGTTCGAATAGCTTGGTTAGACGAAGAAGCTACAAC-ACTACGAT 59
||||||||| ||||||| || ||||||||||||||||||||||||||| || || ||||
Sbjct 22 TAACAAAAAGCGTGTGGCTCTAATAGCTTGGTTAGACGAAGAAGCTACTACTCCTTCGAT 81
Query 60 AATGACGATCTGATGAAGTAACAGTTTTGTCAtctctctctctctctctcGCGACGATGG 119
||| ||||||||||| |||| ||||||||||||||||||| ||||||| | |||||||||
Sbjct 82 AATAACGATCTGATG-AGTAGCAGTTTTGTCATCTCTCTCACTCTCTC-C-CGACGATGG 138
Query 120 CTCGCTTAATCTTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 179
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 CTCGCTTAGTATTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 198
Query 180 ATCATCAATCTTTCTTCATTACCAAAACAGGAGCTCCACGATTTCGTGCTGTTCGTTGCA 239
||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 199 ATCTTCAATCTTTCTTCGTTACCCAAACAGGAGCTCCACGATTTCGCGCTGTTCGTTGCA 258
Query 240 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAGTAGATAATATTGGTG 299
|||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 259 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAATAGAT-A-A-TGGTG 315
Query 300 AAAGTTCAGCTGCATCGAAGAAAATGG----A--ATCATCTGTTGCTGA---TTCTTCTT 350
||| |||| ||||||||||| || ||| | ||||||||||||||| ||||||||
Sbjct 316 AAACTTCATCTGCATCGAAGGAAGTGGAATCATCATCATCTGTTGCTGACTCTTCTTCTT 375
Query 351 CCTCTTCTTCTGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 410
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CTTCTTCTTCGGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 435
Query 411 TTACTGTAATCGCGGCTTTGTCGTTGTTTGTGTCAACAAGGCTCGATTTTGGGATTTCAT 470
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 436 TTACTGTAATCGCGGCTTTGTCGTTATTTGTATCGACAAGGCTCGATTTTGGGATTTCTT 495
Query 471 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCTTTGTCGAATGGGAAGCCGA 530
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 496 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCGTTATCGAATGGGAAGCCGA 555
Query 531 CAGTGGTAGAGTTTTATGCAGATTGGTGTGAGGTTTGTCGAGAACTAGCCCCTGATGTTT 590
| || || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 556 CTGTTGTTGAGTTCTATGCAGATTGGTGTGAAGTTTGTCGAGAACTAGCTCCTGATGTTT 615
Query 591 ACAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ATAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 675
Query 651 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 735
Query 711 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCGAGACAGTATTTAG 770
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 736 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCAAGACAGTATTTAG 795
Query 771 TTGAAAATGTAAATGCGCTTGCAGCCGGGAAGCAATCAATTCCTCATGCCCGAGCCGTGG 830
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 796 TTGAAAATGTGAATGCGCTTGCAGCCGGGAAACAATCAATTCCTTATGCCCGAGCCGTGG 855
Query 831 GACAGTACTCAAG-TGCCGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 889
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GACAGTACTCAAGCT-CAGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 914
Query 890 GGATAGAGAGAGTGACATCACTATCATGGTTCTGGCAGATGATAGAAGTTGTTTCTAACT 949
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 915 GGATAAAGAGAGTGGCATCACTATCATGCTTCTGGCAGATGATAGAAGTTGTTTCTAACT 974
Query 950 CTATAGTGCACAAAAAA-GTAGACAGGAA-GTA--G-C--A--G---CAATGTTTCAAAT 997
||||||||||||||||| ||||||||||| | | | | | | |||||||||||||
Sbjct 975 CTATAGTGCACAAAAAAAGTAGACAGGAAAGGAAAGTCGGAAAGTAGCAATGTTTCAAAT 1034
Query 998 TGATCAAAAGAATCCC 1013
||||||||||||||||
Sbjct 1035 TGATCAAAAGAATCCC 1050
> AT4G37190.1 | Symbols: | LOCATED IN: cytosol, plasma membrane;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment
II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins
in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink). | chr4:17507050-17509747 FORWARD LENGTH=2029
Length=2029
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 983 AGCAATGTTTCAAATTGATCAAAAGAATCCC 1013
|||||||||||||||||||||||||||||||
Sbjct 2018 AGCAATGTTTCAAATTGATCAAAAGAATCCC 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5