BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490965 Length=1827 Score E Sequences producing significant alignments: (Bits) Value AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, ... 2854 0.0 > AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17293992-17297722 REVERSE LENGTH=1982 Length=1982 Score = 2854 bits (1545), Expect = 0.0 Identities = 1712/1790 (96%), Gaps = 21/1790 (1%) Strand=Plus/Plus Query 1 GAGAGAGAGGTAGACAACGTTGATTCCGGCGAAAAGATGACTGAATTCGAAGATCACGAG 60 |||| |||| |||| | |||||||||||||||||||||| |||||||||||||||||||| Sbjct 78 GAGAAAGAGATAGAGAGCGTTGATTCCGGCGAAAAGATGTCTGAATTCGAAGATCACGAG 137 Query 61 GGAAACGGTACTGTTGCTGACGCGCTTTACG-CTGAAGAGAACGGTGGCCGCGGCGGCGA 119 ||||||||||| |||||||||||| |||||| | |||||||| |||||||||| |||||| Sbjct 138 GGAAACGGTACGGTTGCTGACGCGATTTACGAC-GAAGAGAATGGTGGCCGCGACGGCGA 196 Query 120 AATCGAGGATCAATTGGACTCGAAACCTaagagagaatcgcgtgaccatgaaagagagac 179 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 197 AATCGAGGATCAATTGGACTCGAAACCCAAGAGAGAATCGCGTGACCATGAAAGAGAGAC 256 Query 180 atcaagaagtaaagatagagaaagagagaagGGTCGTGATAGGGACAGAGAAAGGGACTC 239 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 257 ATCAAGAAGTAAAGATAGAGAAAGAGAGAAGGGTCGTGATAAGGACAGAGAAAGAGACTC 316 Query 240 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGATAAAGGCAAGGAGAGGAGTAGAGA 299 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 317 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGAGAAAAGCAAGGAGAGGAGTAGAGA 376 Query 300 GAAAGACAGAG---ATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGTAG 356 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 377 CAAAGACAGAGATCATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGCAG 436 Query 357 GGACCGTAGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 416 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 GGAGCGTGGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 496 Query 417 TGATCGTGACCATGATAGGCGTAGAGATGATCGAGGAGGTAGACGCAGTCGTCGATCTCG 476 ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| Sbjct 497 TGATCGTGACCATGATAGGCGGAGAGATGATAGAGGAGGAAGACGCAGTCGTCGATCTCG 556 Query 477 TTCTCGTTCAAAGGATAGATCT-------G----A-G---CGATCTCCATCGAAAAGTAA 521 ||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 557 ATCTCGTTCAAAGGATAGATCTGAGCGCAGAACAAGGTCACGATCTCCATCGAAAAGTAA 616 Query 522 TAAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 GCAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 676 Query 582 TGCTGTTACAGGTCAAGTTCCTCCCGCACCACCAACTCTTCCTGGGGCTGGAATGTTTCC 641 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 677 TGCTGTTACAGGCCAAGTTCCTCCCGCTCCACCAACTCTTCCTGGGGCTGGAATGTTTCC 736 Query 642 CAACATGTTTCCGTTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 701 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 CAACATGTTTCCATTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 796 Query 702 GGCTATGACACAGCAGGCAACTAGGCATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 761 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 797 GGCTATGACACAGCAGGCAACTAGACATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 856 Query 762 TACGGCAAATGAACAGTCCGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 821 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 857 TACGGCAAATGAACAGTCTGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 916 Query 822 TAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 881 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 AAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 976 Query 882 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 977 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 1036 Query 942 TATATTTGAGGGAGCTCCAGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1001 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 TATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1096 Query 1002 TGCAACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1061 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 TGCGACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1156 Query 1062 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1216 Query 1122 TTACTTCACTGAATCCCAAGTCAGGGAGTTGTTGGAGTCCTTTGGAGCCCTTAAGGGCTT 1181 ||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 1217 TTACTTCACGGAATCACAAGTGAGGGAGTTGTTGGAGTCCTTTGGAGGCCTCAAGGGCTT 1276 Query 1182 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1277 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1336 Query 1242 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1337 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1396 Query 1302 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCAACCAAAGCCTGAACAAGAGAG 1361 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1397 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCTACAAAAGCCTGAACAAGAGAA 1456 Query 1362 CGTATTATTGCATGCGCAGCAGCAAATTGCTTTTCAGAGGATTATGTTACAGCCTGGTGC 1421 ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1457 CGTATTATTGCATGCACAGCAGCAAATAGCTTTTCAGAGGGTTATGTTACAGCCTGGTGC 1516 Query 1422 AATGGCAACAACTGTGGTATGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1481 | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1517 AGTGGCAACCACTGTGGTGTGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1576 Query 1482 CGAGGAGTATGAAGATATAATGGAAGACATGAGACAAGAAGGCGGAAAGTTTGGTGCTTT 1541 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1577 TGAGGAGTATGGAGATATAATGGAAGACATGAGACAGGAAGGCGGAAAGTTTGGTGCTTT 1636 Query 1542 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGCCTGGCCTTGGCAA 1601 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1637 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGGCAGGCCTTGGCAA 1696 Query 1602 GGTGTTTTTGAAGTATGCCGATACAGATGGATCGACGAGGGCAAGAACCGGGATGAATGG 1661 |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| Sbjct 1697 GGTGTTTTTGAAGTATGCCGATACAGATGGCTCGACTAGGGCAAGATTCGGGATGAATGG 1756 Query 1662 TAGGAAATTCGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1721 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1757 TAGGAAATTTGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1816 Query 1722 GGGTGATTATGGAGCCTGATGACTTTCTTTGTTTGCTTTCTATTACTTAA 1771 |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1817 GGGTGATTATGGAGCCTGATCACTT-CTTTGTTTGCTTTCTATTACTTAA 1865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90411181545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5