BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490969
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36670.1 | Symbols: | Major facilitator superfamily protein... 2523 0.0
> AT4G36670.1 | Symbols: | Major facilitator superfamily protein
| chr4:17287499-17289590 REVERSE LENGTH=1770
Length=1770
Score = 2523 bits (1366), Expect = 0.0
Identities = 1527/1605 (95%), Gaps = 9/1605 (1%)
Strand=Plus/Plus
Query 1 TAAGA-CTAAACTCTCAACGAACTTTTAGATAAAAGCTTATAATTGAGAGAGACATAGAT 59
||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3 TAAGACCT-AACTCTTAACGAACTTTTAGATAAAAGCTTATAACTGAGAGAGACATAGAT 61
Query 60 CGATAAAGGTCTCTATACTTTCTGGTAACGTGGTGGTGAATTAATCATGGCCGATCAAAT 119
||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||| ||
Sbjct 62 CGACAAAAGTCTCTATACCTTCTTGTAACGTGGTGGTTAATTAATCATGGCCGATC-AA- 119
Query 120 TATCTCCGGCGAGAAGCCGGCCAGAGTTAATAGATTTGCTCTTCAATGTGCTATTGTCGC 179
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 120 -ATCTCCGGCGAGAAGCCGGCCGGAGTTAATAGATTCGCTCTTCAATGTGCTATCGTCGC 178
Query 180 CTCCATCGTCTCCATCATCTTCGGTTACGATACTGGGGTTATGAGTGGAGCGATGGTGTT 239
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 179 CTCCATCGTCTCCATCATCTTTGGTTACGATACTGGTGTTATGAGTGGAGCGATGGTGTT 238
Query 240 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATCGAAGTTCTCACCGGAATTCTCAA 299
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 239 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATAGAAGTTCTCACTGGAATTCTCAA 298
Query 300 CCTTTGTGCCCTTGTCGGATCATTGCTAGCCGGAAGAACGTCGGACATAATCGGACGGCG 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 CCTTTGTGCCCTTGTCGGATCATTGCTCGCCGGAAGAACGTCGGACATAATCGGACGGCG 358
Query 360 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTGGGCTCAATAATGATGGGTTGGGG 419
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 359 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTAGGCTCAATATTGATGGGTTGGGG 418
Query 420 TCCAAATTATCCGGTGCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTTGGTTTTGC 479
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 TCCGAATTATCCGGTTCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTCGGTTTTGC 478
Query 480 TCTGATGGTTGCTCCGGTTTACTCGGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 TCTGATGGTTGCTCCGGTTTACTCTGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 538
Query 540 AGCTTCTCTGCCTCACCTTTGTATCAGTATCGGAATTTTACTAGGTTATCTCGTGAATTA 599
||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 539 AGCTTCTCTTCCTCACCTTTGTATCAGTATAGGGATTTTACTAGGTTATATCGTGAATTA 598
Query 600 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 658
Query 660 TCCATCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCGTCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 718
Query 720 TATGCAAGGCCGTCTCAAGGAAGGCAAGGAGATATTGGGATTGGTATCGAATTCCCCTGA 779
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 719 TATGCAAGGCCGTCTTAAGGAAGGCAAGGAGATATTGGAATTGGTATCTAATTCCCCTGA 778
Query 780 AGAAGCGGAACTCCGCTTTCAAGACATCAAATCCGCTGCGGGAATCGACCCGAAATGCGT 839
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 779 AGAAGCAGAACTCCGCTTTCAAGACATCAAAGCTGCTGCGGGAATCGACCCGAAATGCGT 838
Query 840 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAACT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAGCT 898
Query 900 CATTTTAAGACCAACCCCAGCAGT-ACGACGCGTTCTTTTAACCGCTCTTGGTATTCATT 958
|||| |||||||||| || ||||| | |||| ||||||||||| |||||||| |||||||
Sbjct 899 CATTCTAAGACCAACTCCTGCAGTGA-GACGTGTTCTTTTAACTGCTCTTGGGATTCATT 957
Query 959 TCTTCCAACACGCCACCGGAATCGAAGCCGTGCTTTTATACGGTCCTCGGATCTTCAAGA 1018
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 958 TCTTCCAACACGCCTCCGGAATCGAAGCAGTGCTTTTATACGGTCCGAGGATCTTTAAGA 1017
Query 1019 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACAATCGGTGTCGGAATCATGA 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACTATCGGTGTCGGAATCATGA 1077
Query 1079 AAACGACGTTTATTTTCACAGCGACTTTATTGTTAGACAAGGTAGGTCGGAGGAAGCTTT 1138
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 AAACGACGTTTATTTTCACTGCGACTTTATTGTTAGACAAGGTAGGTCGAAGGAAGCTTT 1137
Query 1139 TGTTGACCAGCGTTGGAGGAATGGTGATTGCGTTGACAATGCTAGGATTTGGGCTTACCA 1198
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 1138 TGTTGACCAGCGTTGGAGGAATGGTCATTGCGTTGACAATGTTGGGATTTGGGCTTACAA 1197
Query 1199 TGGCCCAGAACGCTGGCGGGAAATTAGCGTGGGCTTTGGTACTGAGCATAGTCGCGGCTT 1258
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1198 TGGCCCAAAATGCTGGCGGGAAATTAGCGTGGGCTTTAGTACTGAGCATAGTTGCGGCTT 1257
Query 1259 ATAGTTTCGTGGCTG-TTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGCTCT 1317
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 ATAGTTTCGTGGC-GTTTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGTTCT 1316
Query 1318 GAGGTTTTCCCGTTGAAACTTCGGGCCCAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1377
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1317 GAGGTTTTCCCGTTGAAGCTTAGGGCACAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1376
Query 1378 GTAATGAACGCCACCGTATCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGC 1437
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTAATGAACGCCACCGTGTCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGT 1436
Query 1438 GGGGCTTTCTTTATGTTCGCCGGAGTCGCGGCGGTGGCTTGGAATTTCTTCTTCTTCCTC 1497
|| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1437 GGAGCTTTCTTTATGTTCGCCGGAGTTGCGGCAGTGGCGTGGAATTTCTTCTTCTTCCTC 1496
Query 1498 TTACCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1557
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGCCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1556
Query 1558 GATAAAGTACGCGGCGAAAACAGCGCAGCTTAGCATGTTGAATAT 1602
||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 1557 GATAAAGTACGCGGCGAAAACGGTGCAGCTTAGCATGATGAATAT 1601
Score = 159 bits (86), Expect = 6e-38
Identities = 103/111 (93%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 1602 TTTAGATGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATCGACGCA 1661
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1661 TTTAGTTGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATTGACGCA 1720
Query 1662 CACTTTATTATTTTTT-CAAGTACCAATTTAAGATCAACGGCTAATACATC 1711
| ||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 1721 CGCTTTAGTATTTTTTTCAT-TAACAATTTAAGATCAACGGCTAATACATC 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5