BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490998
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36390.1 | Symbols: | Methylthiotransferase | chr4:17194588... 3110 0.0
> AT4G36390.1 | Symbols: | Methylthiotransferase | chr4:17194588-17197131
REVERSE LENGTH=2158
Length=2158
Score = 3110 bits (1684), Expect = 0.0
Identities = 1942/2064 (94%), Gaps = 27/2064 (1%)
Strand=Plus/Plus
Query 1 AGATTTTGTAAAATCCCTAAGCCTGAGAGAGCCTCCCGTTGTTGTGGTGGAGACTTTGGA 60
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGATTTTGTAAAATCCCTAAGCTTGAGAGAGCCTTCCGTTGTTGTGGTGGAGACTTTGGA 60
Query 61 GCTCCTCAA--TCTCCAATGGCGtcttcttctctctcgtctctctcCTCAATCCTAAGTA 118
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GCTCCTCAATCTCTCCAATGGCGTCTTCTTCTCTCTCGTCTCTCTCCTCAATCCTCAGTA 120
Query 119 ACCCTCATGGTTGTTCTCTCTGCTTCAAAGCCTCTACACGACGCTGTTTCGCTCTTACAT 178
||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||| ||
Sbjct 121 ACCCTCATGGTTGCTCTCTCTGTTTCAAAGCCTCTACACAACGTTGTTTCGCTCTTAGAT 180
Query 179 TCCTCTCCTCGAAAGTAGTAACACATG---------CTTCTTCCTCTGCTCTTATCCCTC 229
|||||||||| ||| || ||| |||| ||||||||||||||||| ||||||
Sbjct 181 TCCTCTCCTC-AAA--AGCAACCCATGCTTCTTCATCTTCTTCCTCTGCTCTTCTCCCTC 237
Query 230 GTTGCC---GCAGCACGCATCGTCTCACACAGAAGCCGATCAATAGGAAGAATGGG-TTT 285
|||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 238 GTTGCCGTAGCAGCACCCATCGTCTCACACAGAAACCGATCAATAGGAAGAA-GGGATTT 296
Query 286 GCCTTAAATCTTTCTAGAAGCTTCTCTGTTTCTCAAATTGCTGGTTCCGGTAAGTTTGAT 345
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 297 TCCTTAAATCTTTCTAGAAGCTTCTCTATTTCTCAAATTGCTAGTTCCGGTAAGTTTGAT 356
Query 346 GGTCCAAGCCTCCACCAGTTCGTCTCCAACGCTCAAGCACATGCTTCTCTTACTACTCCC 405
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 357 GGTCCAAGCCTCCACCAGTTCGTCTCCAACGCTCAAGCACACGCTTCTCTTACCACTCCC 416
Query 406 GAAACTGAATCTGAAAGCACACTAGATTCTGACATTGCATCGAAAGGTCGGATTTATCAC 465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 GAAACTGAATCTGAAAGCACACTAGATTCTGACATTGCATCAAAAGGTCGGATTTATCAC 476
Query 466 GAAACATATGGATGTCAGATGAACATAAACGACATGGAGATTGTCCTTTCGATAATGAAA 525
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 477 GAAACATATGGATGTCAGATGAACATAAACGACATGGAGATAGTCCTTGCGATAATGAAA 536
Query 526 AACTCCGGTTATAAAGAAGTAGTGACAGATCCCGAGAGCGCGGAAGTCATTTTCATTAAC 585
||||| |||||||||||||||||||| ||||| |||||||| |||||||||||| | |||
Sbjct 537 AACTCTGGTTATAAAGAAGTAGTGACGGATCCTGAGAGCGCAGAAGTCATTTTCGTAAAC 596
Query 586 ACTTGTGCTATCCGAGACAATGCAGAACAAAGAGTATGGCAAAGACTTAACTACTTTTGG 645
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 ACTTGTGCTATCAGAGAAAATGCAGAGCAAAGAGTATGGCAAAGACTTAACTACTTTTGG 656
Query 646 TTCCTAAAACGAGAATGGAAAGTCAATG-TCGCTAAAGGAAGAGCGCAATCTCTCAAACC 704
||| ||||||||||||||||||| |||| | |||| ||||||||| |||||||||||||
Sbjct 657 TTCTTAAAACGAGAATGGAAAGTAAATGCT-GCTACAGGAAGAGCAAAATCTCTCAAACC 715
Query 705 TCCTAAAGTTGTTGTTTTGGGATGTATGGCTGAAAGATTGAAAG-ACAAGATTCTAGATT 763
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 716 TCCTAAAGTTGTTGTTTTGGGATGTATGGCTGAAAGATT-AAAGGACAAGATTCTAGATT 774
Query 764 CTGATAAAATGGTTGATGTTGTTTGCGGTCCTGATGCTTATAGAGATCTCCCGAGGCTAT 823
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 775 CTGATAAAATGGTTGATGTTGTTTGTGGTCCTGATGCTTATAGAGATCTCCCGAGGCTAT 834
Query 824 TGGAAGAAGTAGACTATGGACAAAAAGGAATCAACACTCTTCTTTCTCTAGAAGAGACTT 883
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGGAAGAAGTAGACTATGGTCAAAAAGGAATCAACACTCTTCTTTCTCTAGAAGAGACTT 894
Query 884 ACGCCGACATATCCCCAGTCCGAATCTCCGAAAACTCAATTACCGCTTTTGTTTCAGTTA 943
| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 895 ATGCTGACATATCCCCTGTCCGAATCTCTGAAAACTCAATTACCGCTTTTGTTTCTGTTA 954
Query 944 TGAGAGGCTGCAACAACATGTGTGCTTTCTGCATTGTTCCGTTTACAAGAGGCAGAGAGC 1003
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 955 TGAGAGGCTGCAACAACATGTGTGCTTTCTGCATTGTTCCGTTTACCAGAGGCAGAGAGC 1014
Query 1004 GATCACGTCCCGTCGAATCTATAATCCGCGAGGTTGGGGAGTTGTGGGAATCCGGTGTGA 1063
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1015 GATCACGTCCTGTAGAATCTATAATCCGCGAGGTTGGGGAGTTGTGGGAATCGGGTGTGA 1074
Query 1064 AAGAAGTTACGCTTTTAGGACAAAATGTAAACAGCTATAACGATGATTCAGCTGATCCTG 1123
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1075 AAGAAGTTACGCTTTTAGGGCAAAATGTGAACAGCTATAACGATGATTCAGCTGATCGTG 1134
Query 1124 AGTCAGGTGCTAACTGGGAGTACAGTGAGGGATTCTCGAGCAGGTGTAAAGTTAAAAACA 1183
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1135 AGTCAGGTGCTAACTGGGAATACAGTGAGGGATTCTCGAGCCGGTGTAAAGTTAAAAACA 1194
Query 1184 TGGGTTTGCGATTTGCTGATCTCTTGGACCGACTCTCTGTACAGTTCCCAGAGATGCGGT 1243
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1195 TGGGTTTGCGATTTGCTGATCTCTTGGACCGACTCTCTGTAGAGTTTCCAGAGATGCGGT 1254
Query 1244 TTAGGTTTACATCGCCTCATCCTAAAGATTACCCGGACGAGTTGCTGTATTTGATGAGAG 1303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 TTAGGTTTACATCGCCTCATCCTAAAGATTACCCTGACGAGTTGCTGTATTTGATGAGAG 1314
Query 1304 ATAAACATAATATCTGCAATCTCATCCATCTTCCTGCACAGTCTGGTAATAGCAGAATAC 1363
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1315 ATAGACATAATATCTGCAATCTCATCCATCTTCCTGCACAATCTGGTAATAGCAGAATAC 1374
Query 1364 TTGAACAGATGCGTAGAGGTTACACCAGAGAAGCTTACTTGGATCTTGTTAAAAAGATTC 1423
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1375 TAGAACAAATGCGTAGAGGTTACACCAGAGAAGCTTATTTGGATCTTGTTAAAAAGATTC 1434
Query 1424 GGAGTATAATACCAGATGTGGCTATAACCAGCGACTTTATAACTGGCTTCTGTGGAGAAA 1483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GGAGTATTATACCAGATGTGGCTATAACCAGCGACTTTATAACTGGCTTCTGTGGAGAAA 1494
Query 1484 CCGAAGAAGAGCATGAAGAAACCCTAAGCTTGGTGAGAGCAGTTGGGTACGATATGGCAT 1543
| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1495 CTGAAGAAGAGCATCAAGAAACCCTAAGCTTGGTGAGAGCAGTTGGATACGATATGGCGT 1554
Query 1544 ATATGTTTGCATACAGCATGAGAGAAAAGACACACGCTCATCGCAAGTACACAGACGACG 1603
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1555 ATATGTTTGCATACAGCATGAGAGAAAAGACACATGCTCATCGCAACTACACAGACGACG 1614
Query 1604 TTCCAGAGGAAGTGAAACAGAGGCGTTTAACAGAACTCATTGAAGCATTCCGCGAAACAA 1663
|||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1615 TTCCAGAGGAGGTGAAACAGAGACGTTTAACAGAACTCATCGACGCATTCCGCGAAACAA 1674
Query 1664 CAGGTCCGTGTTACGACTCTCAGGTAGGATCTATTCAGTTAGTTCTCGTCGAAGGACCGA 1723
||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 1675 CAGGTCCGTGTTATGACTCTCAGGTAGGATCAACTCAGTTAGTTCTCGTCGAAGGACCAA 1734
Query 1724 ACAAGAGAGCGCCTGAGACAGAACTCATTGGAAAAACCGATAAAGGACACCGAGTTTCGT 1783
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1735 ACAAGAGAGCGCCTGAGACAGAACTCATTGGAAAAACTGATAAAGGACACAGAGTTTCGT 1794
Query 1784 TTGTCACAAAGCCTCTGTTTGATACAGCGTGTCTTCTTGATGGCGATGATCTGAAAAGGA 1843
||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 1795 TTGTCACGAAGCCTCTGTTTGATAAAGCGTGTCTTCTTGATGGTGATGATCTGAAGAGGA 1854
Query 1844 ATCCTGAAATTGGGGATTTTGTGGAGGTTCGGATAGAGAAATCAACGAGGGCATCGTTGT 1903
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1855 ATCCTGGAATTGGGGATTTTGTTGAGGTTCAGATAGAGAAATCAACGAGGGCATCGTTGT 1914
Query 1904 TCGGAGAAGCTCTTGCGATTACTAAACTCTCATTGTTTCACGATGTTGGTGTCG---ATG 1960
| || |||||||| ||||||| |||| | || |||||||||||||||||||||| |||
Sbjct 1915 TTGGGGAAGCTCTCGCGATTAGTAAAATGTCCTTGTTTCACGATGTTGGTGTCGTCGATG 1974
Query 1961 CTGGTGTTGCGTCTTGTGCAAGTTAAGTTAAACTTTGGTTTTCTTTGTTTCGAAAGC-TT 2019
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1975 CTGTTGTTGCGTCTTGTGCAAGTTAAGTTGAACTTCCGTTTTCTTTGTTTCGAAAGCCTT 2034
Query 2020 TATACTTTTTCTTGTGTATACTTT 2043
||||||||||||| ||||||||||
Sbjct 2035 TATACTTTTTCTTCTGTATACTTT 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101254499265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5