BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491048

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35905.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   785    0.0  


> AT4G35905.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:17007028-17008154 REVERSE LENGTH=577
Length=577

 Score =  785 bits (425),  Expect = 0.0
 Identities = 489/520 (94%), Gaps = 4/520 (1%)
 Strand=Plus/Plus

Query  1    CGGAGAGAGCAAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG  60
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   CGGAGAGAGCTAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG  118

Query  61   ACGCCGGCAATGCAATCGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCCAAGC  120
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  119  ACGCCGGCAATGTAATTGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCTAAGC  178

Query  121  AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT  238

Query  181  TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG  298

Query  241  AAGGTGATGCATCAAAAGCTTAATGCCTTTTGCTTTTCCACCCTAATA-AAATAAAATGA  299
            ||||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||| 
Sbjct  299  AAGGTGATGCATCAAAAGCTTAATGACTTTTGCTTTTGCACCCAAAAAGAAATAAAATGG  358

Query  300  TCACAGTGAAGGTAGCAACTTGTATCTGCAGCAACTTATCAATGCTTCGTTCTGTCCTCT  359
            ||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct  359  TCAGAGTGAAGGTATCAGCTTGTATCTGCAGCAACTTATCAATGGTTCGTTCTGTCCTCT  418

Query  360  GTACTAGTTACTTGATCATCTCTTCCACAC-CT-TTTCTAGGCTTGTGACCAACTTCTGC  417
            ||||||||||| ||||||||||||| | || || ||| |||||||||| |||| ||||| 
Sbjct  419  GTACTAGTTACCTGATCATCTCTTCTAAACTCTCTTT-TAGGCTTGTGGCCAAGTTCTGG  477

Query  418  TAGCAATTTTAAGTATGAATGTTTTATGGGAAACATTCATGTAAGCAATTGCAAAACAAT  477
            ||||| |||||||||||||||||| |||||||||||| |||||| |||||| |||||| |
Sbjct  478  TAGCATTTTTAAGTATGAATGTTTGATGGGAAACATTGATGTAACCAATTGAAAAACATT  537

Query  478  GTAGGTGTGTAGTTTCAGGTGAATAAACCGACTTTTTCGT  517
             |||||||||||||||||||||||||||| ||||||||||
Sbjct  538  ATAGGTGTGTAGTTTCAGGTGAATAAACCAACTTTTTCGT  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24715200324


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5