BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491048 Length=517 Score E Sequences producing significant alignments: (Bits) Value AT4G35905.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 785 0.0 > AT4G35905.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17007028-17008154 REVERSE LENGTH=577 Length=577 Score = 785 bits (425), Expect = 0.0 Identities = 489/520 (94%), Gaps = 4/520 (1%) Strand=Plus/Plus Query 1 CGGAGAGAGCAAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 CGGAGAGAGCTAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG 118 Query 61 ACGCCGGCAATGCAATCGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCCAAGC 120 |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 119 ACGCCGGCAATGTAATTGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCTAAGC 178 Query 121 AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT 238 Query 181 TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG 298 Query 241 AAGGTGATGCATCAAAAGCTTAATGCCTTTTGCTTTTCCACCCTAATA-AAATAAAATGA 299 ||||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||| Sbjct 299 AAGGTGATGCATCAAAAGCTTAATGACTTTTGCTTTTGCACCCAAAAAGAAATAAAATGG 358 Query 300 TCACAGTGAAGGTAGCAACTTGTATCTGCAGCAACTTATCAATGCTTCGTTCTGTCCTCT 359 ||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 359 TCAGAGTGAAGGTATCAGCTTGTATCTGCAGCAACTTATCAATGGTTCGTTCTGTCCTCT 418 Query 360 GTACTAGTTACTTGATCATCTCTTCCACAC-CT-TTTCTAGGCTTGTGACCAACTTCTGC 417 ||||||||||| ||||||||||||| | || || ||| |||||||||| |||| ||||| Sbjct 419 GTACTAGTTACCTGATCATCTCTTCTAAACTCTCTTT-TAGGCTTGTGGCCAAGTTCTGG 477 Query 418 TAGCAATTTTAAGTATGAATGTTTTATGGGAAACATTCATGTAAGCAATTGCAAAACAAT 477 ||||| |||||||||||||||||| |||||||||||| |||||| |||||| |||||| | Sbjct 478 TAGCATTTTTAAGTATGAATGTTTGATGGGAAACATTGATGTAACCAATTGAAAAACATT 537 Query 478 GTAGGTGTGTAGTTTCAGGTGAATAAACCGACTTTTTCGT 517 |||||||||||||||||||||||||||| |||||||||| Sbjct 538 ATAGGTGTGTAGTTTCAGGTGAATAAACCAACTTTTTCGT 577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24715200324 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5