BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491095 Length=1439 Score E Sequences producing significant alignments: (Bits) Value AT4G35510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2047 0.0 > AT4G35510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr4:16860452-16862372 REVERSE LENGTH=1474 Length=1474 Score = 2047 bits (1108), Expect = 0.0 Identities = 1364/1478 (92%), Gaps = 56/1478 (4%) Strand=Plus/Plus Query 1 AATTGGAACAAAATTCTCTTGtcttcttca---tcctcctcctcctttctctctgcaaac 57 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 13 AATCGGAACAAAATTCTCTTGTCTTCTTCATCCTCCTCCTCCTCCTTTCTCTCTGCAAAC 72 Query 58 cctaattt-c---ct--t----t-tctcatcttcctctctctctctcttttctTCCCAAA 106 |||||||| | || | | |||||||||||||| ||||||||||||||||| ||| Sbjct 73 CCTAATTTCCTTTCTCCTAAACTCTCTCATCTTCCTCTTTCTCTCTCTTTTCTTCCTAAA 132 Query 107 TGATAAGGTAACTTCAAAACTACGACAATTCAATACTCT-AAGGAAACGCCAAGATTTGG 165 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| | Sbjct 133 TGATAAGGTAACTTCAAAACTACGACAATTCAACACTCTAAAGGACACGCCAAGATTTAG 192 Query 166 GTTTTTAGC-TGATT-TATAATGGAGACGAATCCGTCTGACATGAATCAGCTCGATTCCG 223 ||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 193 GTTTTTAGCTTGATTCAAAAATGGAGACGAATCCGTGTGACATGAATCAGCTCGATTCCG 252 Query 224 ATTCGCATCTCCCTCCTCGAAAGCGATTACTTGCTGGATTCAAGAAACTAAACTCCAACG 283 |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| Sbjct 253 ATTCGCATCTCCCTCCTCGAAAACGATTACTTGCTGGATTCAAGAAATTTAACTCCAACG 312 Query 284 GC---GATGGATCTTTTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 340 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 GCATTAATGGATCTTCTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 372 Query 341 GATCTTCCTCTGCTTCCACCCATGTTCAGACCCATCTCGACAACTTGCTATCTTC-CCGT 399 |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| || | Sbjct 373 GATCTTCCTCTGCTTCCACCAATGTTCAGACCCATCTCGGCAACTTGTTATCTTCTCC-T 431 Query 400 TTCAACAATGACCAGTCACCGGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 459 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 432 TTCAACAATGACCAGTCACCTGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 491 Query 460 GCGGTTAAAGCTGCAAAGGCGGCCAGAGCTATTGCGAACGAGAAGGCTTTGATTTCCGCA 519 |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 492 GCGGTTAAAGCTGCAAAGGCTGCGAGAGCTATTGCTAACGAGAAGGCTTTGATTTCCGCT 551 Query 520 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTCCCTAAAGAAGCA 579 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 552 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTTCCTAAAGAAGCA 611 Query 580 ATGGCTGATTGCAAGGAGAGGTCTCCTAAGAAGAACAAGCAGAAGAAACATGTCCCCGTC 639 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 612 ATGGCTGATTGCAAGGAGAGGTCTCCTAGGAAGAACAAGCAGAAGAAACATGTCCCCGTC 671 Query 640 GAGCTCTTGTATTCAAAGGGACAGCTAAGAGACGAGGACGATGATTTAGCGCGTAGGTTG 699 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 672 GAGCTCTTGTATTCAAAGGGGCAGCTAAGAGACGAGGAAGATGATTTAGCGCGTAGGTTG 731 Query 700 CATCGAGCTATAGGCAATACAT---ACCCTAGAGTCTTGAGAACTTGCTCGGGATTCGAG 756 ||||||||||||| |||||| | | |||||||||||||||||| || | | | | Sbjct 732 CATCGAGCTATAGACAATACGTCGTATCCTAGAGTCTTGAGAACTAGC--G--A---G-G 783 Query 757 GAGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGACCGTAGTTGAAGGTGGGAGT 816 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 784 -AGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGAGCGTAGTTGAAGGTGGGAGT 842 Query 817 AGTAGTATTGTAGTGACCGGTTCTATGAATGACATTGCTGGAGTCGTGGATTCAGACAGC 876 ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 843 AGTAGTATTATAGTGACCGGTTCTATGAAAGACATTGCTGGAGTTGTGGATTCAGACAGC 902 Query 877 TCGTATGAAGGATTAGAGATAGCTAGATCAAACAGGAATGAAGTGGATTCAA-GACTGAT 935 || ||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| Sbjct 903 TCCTATGAAGGATTAGAGATAGCTAGATCAAACAGGGATGAAGCGGATTCGATG-CTGAT 961 Query 936 GATGGAGAAAGCAGAGGAAGAAAATAACTCATTGGTTAAAAGAAGAGGAAGAGTAGTGAA 995 |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | || Sbjct 962 GATGGAGAAATCAGGGGAAGAAAGCAACTCATTGGTTAAAAGAAGAGGAAGAGT-G--AA 1018 Query 996 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAATGGAACTTCCCC 1055 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1019 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAACGGAACTTCCTC 1078 Query 1056 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAGGACAGTGGTGCGATAACGGTCATACC 1115 ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| | Sbjct 1079 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAAGACGGTGGTGCGATCACGGTCATAGC 1138 Query 1116 AGGATCGTCGTCTTGGAAATGCCAGGACCTAAAGGCACCAGAATGCGTGAAGCAGAACAA 1175 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1139 AGGATCGTCGTCTTGGAAATGCCAGGACATAAAGGCACCAGAATGTGTGAAGCAGAACAA 1198 Query 1176 AGCCGTACGGTCATAGTG--T-C--T-----ACAGAAAAAATGACTCtttttttCAAGAT 1225 |||||||||||||||||| | | | ||||||||||||||||||||||||||||| Sbjct 1199 AGCCGTACGGTCATAGTGACTACCATTGTCTACAGAAAAAATGACTCTTTTTTTCAAGAT 1258 Query 1226 TTGGTCAGCATTGCCATTTTCAGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGGTGTG 1285 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1259 TTGGTCAGCATTACCATTTTCGGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGATGTG 1318 Query 1286 TTTGAA--TTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTTG 1343 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1319 TTTTAAAATTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTCG 1378 Query 1344 CAATTGCAGTTGTGTAGAAGAAAGTTTGATATTTTGGATTAATAGATGCAATAAAGTGAT 1403 || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1379 CAGTTG---TTGTGTAGAAGAAAGTTTGATATTTTGGATTCATAGATGCAATAAAGTGAT 1435 Query 1404 GTA-tt-ttttttGTTGAATGATAAGTTTTTTCTTCAT 1439 ||| || |||||||||||||| |||||||||||||||| Sbjct 1436 GTACTTGTTTTTTGTTGAATGGTAAGTTTTTTCTTCAT 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70933370085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5