BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491190 Length=1292 Score E Sequences producing significant alignments: (Bits) Value AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:165423... 2039 0.0 AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:... 1197 0.0 > AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:16542377-16545121 FORWARD LENGTH=1448 Length=1448 Score = 2039 bits (1104), Expect = 0.0 Identities = 1231/1293 (95%), Gaps = 6/1293 (0%) Strand=Plus/Plus Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGTTATATCCGCTCTTGAAGTTG 60 Query 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATCCCACTAGAGCCACACTTAGCTTTCTGT 120 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCTGT 120 Query 121 TATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180 Query 181 GAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240 Query 241 GATGACACAAGCATACCAATGGAAACCAAAGTTCCAATTCTGATAGCTTTCCACCGTCAC 300 |||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 241 GATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCA- 299 Query 301 T-TATACGATGGTGGCTGGCATTTCTCATGTGGTACAAAAGATTACAAAGTTCTAATGGA 359 | |||||||||||| ||||||||| ||||||||||||||||| || ||| |||||||||| Sbjct 300 TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTAATGGA 359 Query 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAGGCTAT 419 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGAAACTTGAAAAAGGGTATCAAGAGGCTAT 419 Query 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479 Query 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTTAGGTTT 539 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTTAGGTTT 539 Query 540 GTCAAAAATCTTCATCGCTTCGGAATTGGAAATACTGACTCCAGATTGGAAGCAGATTTC 599 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 540 GTCAAAAATCTTCATTGCTTCGGAATTAGAAATACTGACTCCAGATTGGAAGCAGATTTC 599 Query 600 AAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 AAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659 Query 660 TAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAATATGTTGA 719 |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 660 TAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTGA 719 Query 720 CAATCTCGAGGACTTAAAAAATGAGGAGAAATCAACACAAGCAGTGCAGTGTCTAAATGA 779 ||| || |||||||| ||||||||||||||| | ||| |||||||||||||| | ||||| Sbjct 720 CAAACTTGAGGACTTCAAAAATGAGGAGAAAGCTACAAAAGCAGTGCAGTGTTTGAATGA 779 Query 780 AATGGTCACTAATGCGTTGACTCATGTTGAAGATTGTTTGAAATCATTGGCTTCATTGCG 839 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 780 AATGGTCACTAATGCATTGAATCATGTTGAAGATTGTTTGAAATCCTTGGCTTCACTGCG 839 Query 840 TGATCCTGCAATATTTCAGTCTTGTGCCATCCCTCAGATCGTGGCGATTGGAACACTTAC 899 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 840 TGATCCTGCAATATTTCAGTCTTGCGCCATCCCTCAGATCGTGGCGATTGGAACACTTGC 899 Query 900 ATTATGCTATAACAATGTAAAAGTATTTAGAGGCGTCGTGAGACTGAGACGAGGTCTAAT 959 |||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||| Sbjct 900 GTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGACGAGGTCTAAT 959 Query 960 AGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATGGTGCGTTCTATGATTT 1019 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 960 AGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGCGTTCTATGATTT 1019 Query 1020 TTCTTGCATGCTACAAACAAAGGTTGACAAGAACGATCCAAATGCCATGAAAACATTAAA 1079 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1020 TTCTTGCATGCTACAAACAAAGGTTGACAATAACGATCCAAATGCTATGAAAACATTAAA 1079 Query 1080 CCGACTCGAAACCATCAAGAAAGTTTGCAGAGAAAATGGAGTCCTTCACAAAAGAAAATC 1139 |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 1080 CCGACTCGAAACCATCAAGAAATTTTGCAAAGAAAATGGAGGACTTCACAAAAGAAAATC 1139 Query 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199 Query 1200 GGCCATAGTCGTTGTATATATATCTCGAAGCAAACCAACGTAAATGACTCTGATTGTGTG 1259 ||||||||||||||||||| ||| ||||||||||| |||| ||||||||||| |||| Sbjct 1200 GGCCATAGTCGTTGTATAT----CTCAAAGCAAACCAATGTAAGTGACTCTGATTTTGTG 1255 Query 1260 AAGTCATCATAAACATAATTTCTAGCTTCTTTG 1292 |||||||||| ||||||||||||||||| |||| Sbjct 1256 AAGTCATCATGAACATAATTTCTAGCTTTTTTG 1288 > AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538282-16541926 FORWARD LENGTH=1711 Length=1711 Score = 1197 bits (648), Expect = 0.0 Identities = 1052/1242 (85%), Gaps = 48/1242 (4%) Strand=Plus/Plus Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60 ||||| |||||| | ||||| ||||| | |||||||| ||||||||||| ||||| || Sbjct 208 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGACATATATCCGCTCCTGAAGATG 267 Query 61 AAACTTGCGATT-ACGAAAGCTCAGAAGCAGATCCC-ACTAGAGCCACACTTAGCTTTCT 118 |||| |||||| | |||||| ||||||||||||| || |||||||||| | ||||| Sbjct 268 AAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCTCCT-GAGCCACACTGGGGTTTCT 325 Query 119 GTTATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178 | ||||| ||||||||||| |||||| |||||||||||| |||||||| ||||| || Sbjct 326 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 385 Query 179 CCGAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238 ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 386 CCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 445 Query 239 AGGATGACACAAGCATACCAA-TGGAAACCAAA-GTTCCAATTCTGATAGCTTTCCACCG 296 ||||||| || |||||||||| | | | ||| ||||| || ||||||||||| ||||| Sbjct 446 AGGATGATACTAGCATACCAACT-G-ATGAAAAGGTTCCCATCCTGATAGCTTTTCACCG 503 Query 297 TCACTTATACGATGGTGGCTGGCATT-TCTCATGTGGTACAAAAGATTACAAAG-TTCTA 354 ||| |||||||| || ||||||| | ||||||||||| || || ||| ||| ||||| Sbjct 504 GCACATATACGATACTGATTGGCATTAT-TCATGTGGTACGAAGGAGTAC-AAGATTCTA 561 Query 355 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAG 414 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 562 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGGTATCAAGAG 621 Query 415 GCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGC-AAGGA 473 ||||| || || || |||| ||||||||||||||| ||||||||||| || ||| ||| | Sbjct 622 GCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAG-A 680 Query 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTT 533 ||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| ||||| Sbjct 681 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTTGGTTT 740 Query 534 AGGTTTGTCAAAAATCTTCATCGCTTC-GGAATTGGAAATACTGACTCCAGATTGGAAG- 591 ||||||||| ||| ||||| ||||| | ||| | || | |||| ||||||||| || Sbjct 741 AGGTTTGTCGAAACTCTTCCTCGCTGCAGGA-TCAGAGGTTTTGACACCAGATTGGGAGG 799 Query 592 CAGATTTCAAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTT 651 | |||||| ||||| | ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 800 C-GATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAACATTATCAGAGATTATCTT 858 Query 652 GAAGACATTAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAA 711 || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 859 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 918 Query 712 TATGTTGACAATCTCGAGGACTTAAAAAATGAGGAGAA-ATCAACACAAG-CAGTGCAGT 769 |||| |||||| || ||||| |||||| | |||||||| | ||| |||| | || |||| Sbjct 919 TATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACA-CAA-ACAAATCCGTACAGT 976 Query 770 GTCT-AAATGAAATGGTCACTAATGCGTTGACT-CATGTTGAAGATTGTTTGAAAT-CAT 826 | || |||||||||||| || |||||||||| | ||| |||||||||| |||||| ||| Sbjct 977 G-CTTAAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACAT 1034 Query 827 TGGCTTCATTGCGTGATCCTGCAATATTTCAGT-CTTGTGCCATCCCTCAGATCGTGGCG 885 || ||| |||||||||||| | ||||||| || || ||||||||||||||||| ||||| Sbjct 1035 -GGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCT-GTGCCATCCCTCAGATCATGGCG 1092 Query 886 ATTGGAACACTTACATTATGCTATAACAATGTAA-AAGTATTTAGAGGCGTCGTGAGACT 944 |||||||||||| |||||||||||||||||| || ||||||| |||||||| |||| ||| Sbjct 1093 ATTGGAACACTTGCATTATGCTATAACAATG-AACAAGTATTCAGAGGCGTTGTGAAACT 1151 Query 945 GAGACGAGGTCTAA-TAGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATG 1003 ||| |||||||| | | |||||||| |||||||| ||||||||||||| ||||||||||| Sbjct 1152 GAGGCGAGGTCTTACT-GCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATG 1210 Query 1004 GTGCGTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAAGAACGATCCAAAT 1062 |||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 1211 GTGCTTTCTATGATTTTTCCTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAAT 1269 Query 1063 GCCATGAAA-ACATTAAACCGACTCGAAACCAT-CAAGAAAGTTTGCAGAGAAAATGGAG 1120 |||| | || ||| |||||||||| ||| || | || |||| | |||||||| ||||| Sbjct 1270 GCCA-GTAAGACACTAAACCGACTTGAAGCCGTTCA-GAAACTCTGCAGAGACGCTGGAG 1327 Query 1121 TCCTTCACAAA-AGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAG--GCTATCTTT 1176 | ||||| ||| ||||||||||||||||| || ||| |||| |||| | | ||||| Sbjct 1328 TTCTTCA-AAACAGAAAATCTTATGTTAATGAC-AAAGGACAA-CCAAACAG-TGTCTTT 1383 Query 1177 GTTGTAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATAT 1218 || ||||| ||||| ||||||||||||||||| ||| |||| Sbjct 1384 ATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATAT 1425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63553889970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5