BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491203
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34550.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 549 1e-155
> AT4G34550.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT2G16365.3); Has 37 Blast
hits to 37 proteins in 8 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:16503201-16504040
FORWARD LENGTH=840
Length=840
Score = 549 bits (297), Expect = 1e-155
Identities = 370/404 (92%), Gaps = 9/404 (2%)
Strand=Plus/Plus
Query 174 TGTCGATTTAATACCTGATATGAACAAAGAACCGCCTATTGCTGCTGACAGAGAAAACTC 233
||||||| |||||||||| |||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 219 TGTCGATGTAATACCTGACATGAACAAAGAACCACCTATTGTTGCGGACAGAGAAAACTC 278
Query 234 GATAGATGGGGACGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 293
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GATAGATGGGGAAGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 338
Query 294 CTTTCT------CAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 347
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CTTTCTCAACAACAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 398
Query 348 AACCAACACTAGATCACATGTCAAACGTCTGAAGACAAACACATCAGATAACAGCGGAAA 407
|||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||
Sbjct 399 AACCAACAGTAGATCACAAGTCAAACGTCTGAAGACAAACGCAGCAGATAACAGGGGAAA 458
Query 408 TGAAACCAAGAGCATGATGGTTTTCGAAGAAGGACCATCATCAGGGAAGAAGGTGAACTA 467
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 459 TGAAACCAAGAACATGATGGTTTTCGAAGAAGGACCATCA---GGGAAGAAGGTGAACCA 515
Query 468 CTTCTTTAACAGAATATTCGGAATCAACAAACCCGGATCCAGAAGATATCAAAAATCCTC 527
|||||| |||| ||||||||||| | ||| | |||||| |||||||||||||||| |||
Sbjct 516 CTTCTTCCACAGTATATTCGGAATGACCAATCTCGGATCAAGAAGATATCAAAAATTCTC 575
Query 528 CACATCACAAATCAAGAATCTGAATATGGGAGGAGGAGAAGACG 571
||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 576 CACATCACAAAACAAGAATCTGAATATGGGAGAAGCAGAAGACG 619
Score = 233 bits (126), Expect = 1e-60
Identities = 144/153 (94%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAACATTTTATGGGCTTAAACGAGATTAAGACAGAAAGTTGTGTTCGTGGTTAT 60
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 1 ATGTCTGAACATTTTATGGGCTTAAGCAAGATTAAGACAGAAAGTTGTGTTCATGGTTAT 60
Query 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAGAGATGCCAAGGAGATTAACTTA 120
||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAAAAATGCCAAGGAGATTCACCTA 120
Query 121 CCAGAAGATGGTCAACTATTGAAAGAGTCGACA 153
|||||||||||||| |||||||||||||| |||
Sbjct 121 CCAGAAGATGGTCACCTATTGAAAGAGTCAACA 153
Score = 202 bits (109), Expect = 4e-51
Identities = 129/138 (93%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 571 GGCACTGTGCTAGAG-A--AGCAGTTTCCAAGTATTGTAGCAATGGCAATGATGAAGAAG 627
||||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 703 GGCACTGTGCTAGAGAAGCAGCAGTTTCCAAGTATTGCAGCAATGGCAATGATGAGGAAG 762
Query 628 GCTCTGAGCGGTACAAACCCGACCGGCTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 687
||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 763 GCTCTGAGCGGTATAAACCCTACCGGTTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 822
Query 688 GCTGAGGATTTAAGGTGA 705
|||||||||||||| |||
Sbjct 823 GCTGAGGATTTAAGTTGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5