BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491231
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34350.1 | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-... 2518 0.0
> AT4G34350.1 | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-2-enyl
diphosphate reductase | chr4:16428480-16431114 REVERSE
LENGTH=1678
Length=1678
Score = 2518 bits (1363), Expect = 0.0
Identities = 1559/1650 (94%), Gaps = 27/1650 (2%)
Strand=Plus/Plus
Query 1 CGTCTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAGTTCT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 39 CGTTTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAATTC- 97
Query 61 A-CCGATTATGCGTTCGGCCAGATACTTTCGTGCTGGAGAATCATCTCTCTGGATCCGGA 119
| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 98 AGCCGATTATGCGTTCGACCGGATACTTTCGTGCGGGAGAATCATCTCTCTGGATCCGGA 157
Query 120 TCTCTCCGGCGCCGGAAAGCTTTATCAGTCCGATGCTCGTCTGGAGATGAGAACGCTCCT 179
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 158 TCTCTCCGCCGCCGGAAAGCTTTATCAGTCCGGTGCTCGTCTGGCGATGAGAACGCTCCT 217
Query 180 TCGCCATCGATGGTGATGGACTCCGATTTTGATGCGAAGGTGTTCCGTAAGAACTTGACG 239
||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 218 TCGCCATCGGTGGTGATGGACTCCGATTTCGACGCCAAGGTGTTCCGTAAGAACTTGACG 277
Query 240 AGAAGCGAGAATTACAATCGTAAAGGGTTCGGTCACAAGGAGGAGACACTCAAGCTCATG 299
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 278 AGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATG 337
Query 300 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACGTATTCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 338 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCT 397
Query 360 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGCTTTTGCTGGGGTGTTGAGCGT 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 398 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGTTTTTGCTGGGGTGTTGAGCGT 457
Query 420 GCTGTTCAGATTGCATATGAAGCAAGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 458 GCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 517
Query 480 AACGAAATTATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AACGAAATCATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 577
Query 540 ATTCCGGTTGAGGATTCAAAGAAGCAGTTTGATGTAGTAGAGAGAGATGATGTGGTTATC 599
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 578 ATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATC 637
Query 600 CTTCCTGCATTTGGAGCTGGGGTTGATGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 659
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 638 CTTCCTGCGTTTGGAGCTGGTGTTGACGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 697
Query 660 ATTGTCGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 719
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATTGTTGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 757
Query 720 AAGGGCGAATACACATCAGTAATTCATGGTAAATATAATCACGAAGAGACGATTGCAACT 779
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 758 AAGGGGGAATACACATCAGTAATCCATGGTAAATATAATCATGAAGAGACGATTGCAACT 817
Query 780 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCGAATTACGTTTGT 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 818 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCAAATTACGTTTGT 877
Query 840 GATTACATTCTCGGTGGCCAATATGATGGATCTAGCTCTACAAAAGAGGAGTTCATGGAG 899
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 878 GATTACATTCTCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG 937
Query 900 AAATTCAAATACGCAGTTTCGAAAGGTTTTGATCCTGACCATGACCTTGTCAAAGTTGGT 959
||||||||||||||| ||||||| ||||| ||||| ||| ||||||||||||||||||||
Sbjct 938 AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGT 997
Query 960 ATTGCAAACCAAACAACGATGCTTAAGGGAGAAACAGAGGAGATAGGAAAATTACTCGAG 1019
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 998 ATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGGAAGATTACTCGAG 1057
Query 1020 -CGAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1078
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AC-AACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1116
Query 1079 CACGATATGCGACGCGACTCAAGAGCGACAAGACGCAATCTATGAACTAGTGGAAGAGAA 1138
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1117 CACAATATGCGACGCTACTCAAGAGCGACAAGACGCAATCTATGAGCTAGTGGAAGAGAA 1176
Query 1139 GATTGACCTCATGCTAGTGGTCGGCGGGTGGAATTCAAGTAACACCTCTCACCTTCAGGA 1198
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1177 GATTGACCTCATGCTAGTGGTTGGCGGATGGAATTCAAGTAACACCTCTCACCTTCAGGA 1236
Query 1199 AATCGCAGAGGCACGGGGAATCCCATCATACTGGATTGACAGTGAGAAACGGATAGGACC 1258
|||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1237 AATCTCAGAGGCACGGGGAATCCCATCTTACTGGATCGATAGTGAGAAACGGATAGGACC 1296
Query 1259 TGGGAACAAAATAGCATCTAAGCTCCATTATGGAGAGCTGGTCGAGAAGGAAAATTTTCT 1318
|||||| |||||||| | ||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1297 TGGGAATAAAATAGCCTATAAGCTCCACTATGGAGAACTGGTCGAGAAGGAAAACTTTCT 1356
Query 1319 CCCGAAGGGACCGATAACCATCGGTGTGACATCAGGTGCATCAACCCCAGATAAGGTCGT 1378
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1357 CCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGGTCGT 1416
Query 1379 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTGTTGCAGCTGGCTTG 1438
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1417 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTATTGCAGCTGGCTTG 1476
Query 1439 ATTCGGCCTTGTGATCGTATTCAAATA-TATTGTTTGTTATTATGTCAAGAGTGTACTAA 1497
||||||| ||||||||||||||||||| |||| | || || ||||||||||||||||
Sbjct 1477 ATTCGGCATTGTGATCGTATTCAAATACTATT-T--GTCAT---GTCAAGAGTGTACTAA 1530
Query 1498 AATATACT-TAGTTGTATGATT-GTCTTTATAACTTTTGTAA----TT--------CAAA 1543
|||||| | ||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1531 AATATA-TGTAGTTGTATGATTTGTCTTTATAACTTTTGTAAGAGGTTTTGTAATTCAAA 1589
Query 1544 GTCAACATCCTTGTTCATCTTACTCCACTTAATGTTCTTACCATAATCGTAATTAGATTG 1603
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1590 GTCAACATCCTCGTT-ATCTTACTCCACTTAATGTTCTTACCATAATCGCAATTAGACTG 1648
Query 1604 ATACAGAACTTAAGACTGTGTAAGGCTGTC 1633
||| ||||||| ||||||||||||||||||
Sbjct 1649 ATATAGAACTTGAGACTGTGTAAGGCTGTC 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5