BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491249
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34220.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3965 0.0
> AT4G34220.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:16381506-16384194 REVERSE LENGTH=2561
Length=2561
Score = 3965 bits (2147), Expect = 0.0
Identities = 2385/2500 (95%), Gaps = 15/2500 (1%)
Strand=Plus/Plus
Query 1 TGCTCCACTATCTCATAGATTTGGTTACCAGAACAACTTATCACTTGAGTGGTTCAACCT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 TGCTCCACTATCTCATAGATTTGGTGACCAGAACAACTTATCTCTTGAGTGGTTCAACCT 60
Query 61 CTA--TCTCTCTCTTTCTGCTATGAAAATGCATAGCCAAATGTAATACTTTAGAGAGGGA 118
||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 61 CTATCTCTCTCTCTTTCTGCCATGAAAATGCAAAGCCAAATGTAATA-GTTAGAGAGGGA 119
Query 119 GATACCAAGAACTGAAAAACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGCC 178
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 GAAACCAAGAACTGAAAGACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGTC 179
Query 179 CTCTTCCACCTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTTCCACTTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 239
Query 239 CTGCTTACTTTCAAATACTCCATCCTCAGTGACCCTCTCTTTGTTCTACGCAACTGGAAC 298
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 240 CTGCTTACTTTCAAATACTCCATCCTCACTGACCCTCTCTCTGTTCTACGCAATTGGAAC 299
Query 299 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACTTGTACAGAGCTTGGGAAGCCT 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACATGTACAGAGCTTGGGAAGCCT 359
Query 359 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACATCTTTTGGGT 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACACCTTTTGGGT 419
Query 419 TCCATCACTCCGGACTTGTTCTCGATTCCCCATCTAAGGATCTTGGATCTGTCCAGCAAT 478
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 420 TCCATCACTCCGGACTTGTTCTCGATTCCATATCTAAGGATCTTGGATCTGTCTAGCAAT 479
Query 479 TTCTTCAACGGGTCACTCCCTGACTCGGTGTTCAACGCCACTGAGCTTCA-AGTTATCTC 537
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 480 TTCTTCAACGGGTCACTCCCGGACTCGGTGTTCAACGCCACTGAGCTTCAGAG-TATCTC 538
Query 538 CCTTGGAAGCAACAATATCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGATTAATCT 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 CCTTGGAAGCAACAATCTCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGACTAATCT 598
Query 598 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGAGAAATTCCGCTCAACATCTCACT 657
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGCGAAATTCCGCTCAACATCTCACT 658
Query 658 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAGAACTCCTTTTCAGGTGATATTCCAAG 717
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 659 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAAAACACCTTTTCAGGTGATATTCCAAG 718
Query 718 TGGTTTCGAAGCAGTACAAG-TTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 776
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGTTTCGAAGCAGCAC-AGATTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 777
Query 777 CCAAGGATTTGGGAGGAAAAAGTCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 CCAAGGATTTGGGAGGAAAAAGCCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 837
Query 837 GCGAGATTTCTCCAGGTTTTGCAGAGAAGTTTCCAGCTAATGCCACAGTCGATCTCTCCT 896
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 GCGAGATTTCTCCAAATTTTGCAGAGAAGTTTCCAGCAAATGCCACAGTCGATCTCTCCT 897
Query 897 ATAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 TTAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAGT 957
Query 957 CTTTTTCCGGTAACCAAGA-CTTGTGTGGGAAACCATTGAAGATCCTTTGCTCAATTCCT 1015
||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||
Sbjct 958 CTTTTTCCGGTAACCAAGAGCTT-TGTGGGAAGCCATTGAAGATCCTTTGTTCAATTCCT 1016
Query 1016 TCCACTCTTTCAAACCCTCCAAATGTCTCTGACACTACTTCACCGGCAATAGCAGTTAAA 1075
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1017 TCCACTCTTTCAAACCCTCCAAATATCTCTGAAACTACTTCACCAGCAATAGCAGTTAAA 1076
Query 1076 CCAAGAAGCACAGCTCCAATAAACCCTTTGACAGAGTCACCAAGTCAGACAGCAAAAAGT 1135
|||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1077 CCAAGAAGTACAGCTCCAATAAACCCTTTGACAGAAAAACCAAATCAGACAGGAAAAAGC 1136
Query 1136 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTAGCAGATATAGTTGGTCTAGCTTTC 1195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTTGCAGATATAGTTGGTCTAGCTTTC 1196
Query 1196 ATTGGTCTACTCGTGCTATACGTATACCAGGTCAGGAAACGCAGAAGGTACCCAGAATCC 1255
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 ATTGGTCTACTCGTGCTCTACGTATACCAAGTCAGGAAACGCAGAAGGTACCCAGAATCT 1256
Query 1256 AGCAGATTCAGCTTCTTCAAATTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1315
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGCAAATTTAGCTTCTTCAAGTTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1316
Query 1316 AGCGCCACGGAGGTCACAGTCCCAGAATCACCAGAGGCAAAAACGGCATGCGGTTCGTGC 1375
||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 1317 AGCACCACTGAGGTCACAGTCCCAGAATCACCAGAGGCCAAAACGACATGCGGTTCATGC 1376
Query 1376 ATAATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGATGTAGAGAAT 1435
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1377 ATTATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGACGTAGAGAAT 1436
Query 1436 CAGCAAACCGTTCAGGCATTCAGTCGAACAGATGGTGGGCAACTGAAACAGAGCTCCCAA 1495
|| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1437 CAACAAACCGTTCAGGCATTCACTCGAACAGATGGTGGGCAACTGAAGCAGAGCTCCCAA 1496
Query 1496 ACTCAACTAGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGATACTCTACTAAAGGCA 1555
|||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1497 ACTCAATTGGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGACACTCTGCTAAAGGCA 1556
Query 1556 TCTGCTTATATATTGGGAACCACTGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1615
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1557 TCTGCTTACATATTGGGAACCACCGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1616
Query 1616 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGTGAAACCTAAG 1675
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1617 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGCGAAACCCAAG 1676
Query 1676 GAATTCGAAAGGGAGGTTCGTGCCATCGCTAAGCTTCGACACCCAAATCTCGTCAGAATT 1735
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1677 GAATTCGAGAGGGAGGTTCGTGCCATCGCTAAGCTTCGTCACCCAAATCTCGTCAGAATT 1736
Query 1736 CGTGGGTTCTGTTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1795
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CGTGGGTTCTGCTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1796
Query 1796 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCGTCTTCTTCGTCGTCA 1855
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1797 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCATCTTCTTCGTCGTCA 1856
Query 1856 TTACAAAACCCTCTTAGTTTTGA-GACACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1914
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1857 TTACAAAACCCTCTTACTTTTGAAG-CACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1915
Query 1915 ACTATCTTACATCAATGAGAAGAAACACGTGCACGGTAACATCAAGCCCAATAACATTCT 1974
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1916 ACTATCTTACATCAATGAGAAGAAACAAGTGCACGGTAACATCAAGCCCAATAACATTCT 1975
Query 1975 CCTGAACGTTGAGAATGAGCCCATCATCACCGATCTAGGGCTAGATCGCCTCATGACACA 2034
| |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1976 CTTGAACGCTGAGAATGAGCCCATCATCACCGATTTAGGGCTAGACCGCCTCATGACACC 2035
Query 2035 AGCGCGTGAGTCTCGCACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2094
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 AGCGCGTGAATCTCACACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2095
Query 2095 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTATTCCTTTGGAGTCATACTTTT 2154
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2096 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTACTCCTTTGGCGTCATACTTTT 2155
Query 2155 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2215
Query 2215 AACCGGTTCTGAAGCAGAAGAGAATGGCCGGTTCTTGAGGTTGATCGACGGTGCAATTAG 2274
| ||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2216 ATCCGACTCTGCAGCGGAAGAGAATGGCCGGTTCTTGAGGTTAATCGACGGTGCAATTAG 2275
Query 2275 GAGCGATGTGGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2334
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 GAGTGATGTCGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2335
Query 2335 TGTCTCTTCCTTGCCTCAGAAGCGACCGCCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2394
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2336 TGTCTCTTCCTTGCCTCAGAAGCGACCATCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2395
Query 2395 AATGTGTGTTTTAGTTTGAGTTCTTAAATCGTA--GCCCAAATTCGTTTTGGCAATATAG 2452
||| ||||||||||||||| ||||||| ||||| ||| || | ||||||||||||||||
Sbjct 2396 AATTTGTGTTTTAGTTTGATTTCTTAATTCGTATAGCCTAAGT-CGTTTTGGCAATATAG 2454
Query 2453 AAAGTGGATTTGTTATGTATGTTTTAGATGTGTTGCATAA 2492
||||| || |||||||||||||||||||||||||| |||
Sbjct 2455 AAAGTT-ATGTGTTATGTATGTTTTAGATGTGTTGCTTAA 2493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123661514495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5