BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491262
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34120.1 | Symbols: LEJ1, CDCP1 | Cystathionine beta-synthas... 1572 0.0
> AT4G34120.1 | Symbols: LEJ1, CDCP1 | Cystathionine beta-synthase
(CBS) family protein | chr4:16341009-16343118 FORWARD LENGTH=1127
Length=1127
Score = 1572 bits (851), Expect = 0.0
Identities = 1025/1101 (93%), Gaps = 44/1101 (4%)
Strand=Plus/Plus
Query 1 CCACCCAATCAAAACGcttctc-cttc-t-t-cttcttcacttctctctctccttcaaca 56
|||||||||||||||||||||| |||| | | ||||||||| | ||||||||||||||||
Sbjct 37 CCACCCAATCAAAACGCTTCTCTCTTCTTCTACTTCTTCAC-T-TCTCTCTCCTTCAACA 94
Query 57 aaattttctacctttg--t-ttctctcagatttcaTaaa-aaaaGATTAAATTTTTCATT 112
|||||||||||||||| | ||||||||||||||||||| |||||||| ||| |||||||
Sbjct 95 AAATTTTCTACCTTTGTTTCTTCTCTCAGATTTCATAAAGAAAAGATTTAATCTTTCATT 154
Query 113 GGAATTC-GTGAGGT-ACAGAGGATAAGCGATTATGGGTTCCATCTCTTTATCCAATTCT 170
|||| || |||| || ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 155 GGAA-TCTGTGA-GTAACAGAGGATAAGCGAATATGGGTTCAATCTCTTTATCCAATTCT 212
Query 171 CTGCCCATAACGCGACTTCCACTACTTACATCACTCAATCATCAATGcttccttccgatt 230
|||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 213 ATGCCCATAACTCGACTTCCACTACTTACATCACTCTATCATCAAAGCTTCCTTCCGATT 272
Query 231 tcttcttcatctttctctcttcttcctctctctAATCGTCGTCGCTCCTCCACTTTTTCA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TCTTCTTCATCTTTCTCTCTTCTTCCTCTCTCTAATCGTCGTCGCTCCTCCACTTTTTCA 332
Query 291 CCGTCAATCGCCGTCTCTGCCTTCTTCGCAGCTCCTGCCAGCG-T--TAATAATAACTCT 347
||||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 333 CCGTCAATCACCGTCTCTGCCTTCTTCGCTGCTCCTGCCAGCGTTAATAATAATAACTCT 392
Query 348 GTTCCGGCAAAAAATGGAGGTTACACTGTTGGGGATTTCATGACACCGAGACAGAATTTG 407
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 393 GTTCCGGCAAAAAATGGAGGTTACACAGTTGGGGATTTCATGACTCCGAGACAGAATTTG 452
Query 408 CACGTTGTTAAGCCCTCAACGTCGGTCGATGATGCATTGGAACTTCTGGTTGAGAAGAAA 467
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 453 CACGTTGTTAAGCCCTCTACGTCGGTCGATGATGCGTTGGAACTTCTGGTTGAGAAGAAA 512
Query 468 GTCACGGGATTGCCTGTAATTGATGATAATTGGACACTGGTTGGCGTTGTTTCTGATTAC 527
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 513 GTCACGGGATTGCCTGTAATTGACGATAATTGGACACTGGTTGGTGTTGTTTCTGATTAC 572
Query 528 GATTTGCTTGCACTGGACTCCATCTCTGGCCGCAGTCAAAATGATACAAACTTATTCCCT 587
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 573 GATTTGCTTGCATTGGACTCCATCTCTGGTCGCAGTCAAAATGATACAAACTTGTTCCCT 632
Query 588 GATGTCGACAGTACCTGGAAAACGTTTAACGAACTCCAGAAACTGATCAGTAAGACATAT 647
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 633 GATGTCGACAGTACCTGGAAAACGTTTAACGAACTACAGAAACTGATCAGTAAGACATAT 692
Query 648 GGAAAAGTTGTTGGAGACTTGATGACACCATCTCCTCTCGTTGTCCGTGATTCTACCAAT 707
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 693 GGAAAAGTTGTTGGAGACTTGATGACACCGTCTCCTCTCGTTGTCCGTGATTCTACCAAT 752
Query 708 TTAGAAGATGCAGCCAGGTTGCTTCTGGAAACAAAATTCCGAAGATTACCAGTCGTGGAT 767
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 753 TTAGAAGATGCAGCCAGGTTGCTTCTGGAAACAAAGTTCCGAAGATTACCCGTTGTTGAT 812
Query 768 GCTGATGGAAAACTGATTGGGATCCTTACAAGGGGAAACGTTGTAAGGGCTGCGCTGCAG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GCTGATGGAAAACTGATTGGGATCCTTACAAGGGGAAACGTTGTAAGGGCTGCGCTGCAG 872
Query 828 ATCAAACGGGAAACCGAGAACTCTACATAGCTAGGAAGCAGCAGTGATA-AGGCAGATCC 886
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 873 ATCAAACGGGAAACCGAGAACTCTACATAGCTAGGAAGCAGCAGTGATGGAG-CAGATC- 930
Query 887 CTTGAATCTGCCATAGTTAATAGCGAAATCTATTTATTCCATTGATATAAGTATATATAT 946
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 931 -T-GAATCTGCCATAGTTAATAGCGAAATCTATTTATTCCATTGATATAAGTATATATGT 988
Query 947 GCACTCATTCTCTGTTAATTTT---T-----G--G---TTTTTGTTACTTTAGGAGTAAC 993
|| |||||||||| |||||| | | | ||||||||||||||||||||||
Sbjct 989 A-AC-CATTCTCTGTCAATTTTCGGTTTTCAGAAGCAATTTTTGTTACTTTAGGAGTAAC 1046
Query 994 ATTTCTCAGACTCAGAACTGAAGACAAATGGTATA---GCT---TATAT-TTTATTGTAG 1046
||||||||||||| ||||||||||||||||||||| | | ||||| ||||||||||
Sbjct 1047 ATTTCTCAGACTCGGAACTGAAGACAAATGGTATATTTGATACATATATGTTTATTGTAG 1106
Query 1047 CACAAGTCTACTCTTATCACC 1067
|||| ||||||||||||||||
Sbjct 1107 CACAGGTCTACTCTTATCACC 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5