BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491275 Length=898 Score E Sequences producing significant alignments: (Bits) Value AT4G33980.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 952 0.0 > AT4G33980.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). | chr4:16282696-16285059 REVERSE LENGTH=989 Length=989 Score = 952 bits (515), Expect = 0.0 Identities = 620/671 (92%), Gaps = 6/671 (1%) Strand=Plus/Plus Query 15 AGA-GAGGAGCCGCAGCGATGGAGAATGATTACACGGTGAATATTGTTTCTCTGGAGATG 73 ||| |||||| ||| ||||||||||||||| ||||||||||||||| |||||||||| | Sbjct 96 AGAGGAGGAGAAGCAACGATGGAGAATGATTGCACGGTGAATATTGTCTCTCTGGAGAAG 155 Query 74 GATCGTGATGTTGCCGAGTCGTCGGCTGAATCTCAGAGCGAGTCGACTCTATCGAACTCG 133 ||||| |||||| | ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 156 GATCGCGATGTTTCGGAGGCGTCGGCTGAATCTCAGAGCGAGTCGACTCTTTCGAACTCG 215 Query 134 CTCGAGTCCGGTGTTACGGCTGAGACCTCTCGTGCTGATGCTGATTCCAAACTGGATGAG 193 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 216 CTCGATTCCGGTGTTACGGCTGAGACCTCTCGTTCTGATGCTGATTCCAAACTGGATGAA 275 Query 194 TGTGCTGGTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 253 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 TGTACTGCTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 335 Query 254 GTTAGGCAGTTGTATTCCTTCCTTGGAGGAGAGACTCAAAGACTTTCTAGAACCCGTGAT 313 |||||||| || || ||||| |||||||| | |||||| |||||||||||||| |||||| Sbjct 336 GTTAGGCAATTATACTCCTTGCTTGGAGGTGGGACTCAGAGACTTTCTAGAACTCGTGAT 395 Query 314 GTGCAGTCTAAGTCTCACAAATCGA-CTGATCAGTTTACGGTCCTACAAAATGGCTGCTG 372 ||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||| ||||| Sbjct 396 GTGCAGTCTAACTCTCATAAATC-AGCTGATCAGTTTACCGTCCTACAAAATGGTTGCTG 454 Query 373 GCAGAATGTTAACTTTGGAAAGAAACAAGCTCATTTGGAGACTTCATCTGAATTTCGTTT 432 |||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct 455 GCAGAAGGTTAACTTTGGAAAGAAACAATCTTGTTTGGAGACTTCATCTGAGTTTCGTTT 514 Query 433 TCAGAAAAAATCATTGAGAAGTAAACCTGAAAATCCCAAGGGAAATTACACCGTGGGAAC 492 ||| | ||| |||||||||| ||| ||||||||| |||| |||||||||||| ||||||| Sbjct 515 TCACAGAAATTCATTGAGAAATAAGCCTGAAAATTCCAACGGAAATTACACCATGGGAAC 574 Query 493 TGCTGTCCAAGGAGATGTGTTATGTCATGAAGAAACCAAACACTCAGAGGCGTCAGGGca 552 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 575 TACTGTCCAAGGAGATGTGTTATGTCATGACGAAACCAAACACTCAGAGGCGTCAGGGCA 634 Query 553 gaatttc--ag-agaagaagaagaagaagagaagggagaggtgagcagaaaacgagacag 609 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 635 GAATTTCAGAGAAGAAGAAGAAGAAGAAGAGAAGGGAGAGGTGAGCAAAAAACGAGAAAG 694 Query 610 agaagCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 AGAAGCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 754 Query 670 GAAGCCCAGAA 680 ||||||||||| Sbjct 755 GAAGCCCAGAA 765 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43854410331 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5