BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491316
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33640.1 | Symbols: | unknown protein; Has 30201 Blast hits... 712 0.0
> AT4G33640.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159548-16160327
REVERSE LENGTH=583
Length=583
Score = 712 bits (385), Expect = 0.0
Identities = 509/564 (90%), Gaps = 27/564 (5%)
Strand=Plus/Plus
Query 1 CAGAAAGAGTCTCTTCTTCAGAATCCAATC-TTATACATTGATTACGCTGTTGAGACCTG 59
||||||||||||||||||| ||||||||| || |||| |||| ||||||||||||||
Sbjct 37 CAGAAAGAGTCTCTTCTTC--AATCCAATCTTTTTACA-ACATTAGGCTGTTGAGACCTG 93
Query 60 AATTCTCTGAGGAGgaagaagaagaagaaagaatgaacgtagaagaagagattcagaaac 119
|| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 94 AAATCTCT-------AAG--GAAGAAGAAAGAATGAACGTAGACGAAGAGATTCAGAAAC 144
Query 120 tggaagaagagaTCCATCGTCTTGGTTCTC-TCCAGACCGATGGCTCTTACAAGGTGACG 178
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 145 TGGAAGAAGAGATCCATCGTCTTGGTTCTCGTC-AGACCGATGGCTCTTACAAGGTGACG 203
Query 179 TTTGGAGTCTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TTTGGAGTGTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT 263
Query 239 CTGAGAGCCGCCAAGAAACGCAAAATAGTTGCATTCCAAGGTGAACTCTTGCTTCAAGGC 298
|||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 264 CTGAGAGCTGCCAAGAAACGCAAAATAGTCGCATTTGAAGGTGAACTTTTGCTTCAAGGC 323
Query 299 GTTCACGACAAGGTTGAGATCACTCTCCGACCACCACCACCGCCACCCCAAGCTGCTGCT 358
|||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 324 GTTCACGATAAGGTTGAGATCACTCTCCGACCAACACCACCGCCACCGCAAGCTGCTGCT 383
Query 359 G-T-C-GC--C-TCCTCCTAAGTTCCCATTTCTGCTTTAAAATCTTTATACTATTGAGTG 412
| | | || | |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 384 GCTACTGCAGCCTCCTCCTAAGTTCCCATTTCTGCTTTTAA-TCTTTATACTATTGAGTG 442
Query 413 TAATGAAATGATAAACTTGAAAATCAATGATTCCTTTGCTTCTCTATTGGCATGATCACA 472
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 443 TAATGAAATGATAAACTTGAAGATCAATGATTCCTTTGCTTCTCTATTGTCATGATCACA 502
Query 473 TCGCTTAAGCTATTTTTCTGTTATTTGTTACATGTAGTAACCAAGAGAC-ATTAACAAGA 531
| |||| |||||| ||| | | | ||||| ||||||||||| ||| || ||||||||||
Sbjct 503 TTGCTTGAGCTATATTT-T-TAAGTTGTTGCATGTAGTAACAAAGTCACTATTAACAAGA 560
Query 532 A-GTATTTCTTCTCTTCTTCTGCC 554
| | |||||||||||| |||||||
Sbjct 561 AAG-ATTTCTTCTCTTTTTCTGCC 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5