BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491330

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33550.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   549    9e-156


> AT4G33550.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:16134440-16135056 
FORWARD LENGTH=617
Length=617

 Score =  549 bits (297),  Expect = 9e-156
 Identities = 317/327 (97%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  73   ATGGGAAATGGCATGATAAGGACATTGGTTATTCTAGCACTAGCTTTATTCATGATCGGT  132
            ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  99   ATGGGAAGTGGCATGATAAGGACATTGGTTATTCTAGCAATAGCTTTATTCATGATCGGT  158

Query  133  TCCGACAATGTCCACGTGGCAACAGCTCAGGTCTGTGGAGCTAACTTGTCGGGACTGATG  192
            |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  159  TCCGACAACGTCCACGTGGCAAAAGCCCAGGTCTGTGGAGCTAACTTGTCGGGACTGATG  218

Query  193  AATGAATGTCAACGCTACGTCAGCAACGCCGGACCAAACTCTCCGCCACCGTCTCGGTCT  252
            || ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct  219  AACGAATGTCAACGCTACGTCAGCAACGCCGGACCAAATTCTCAGCCGCCGTCTCGGTCT  278

Query  253  TGTTGTGCTCTAATCCGTCCCATCGACGTACCTTGTGCTTGCCGCTACGTTTCAAGGGAT  312
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  279  TGTTGTGCTCTAATCCGTCCCATTGACGTACCTTGTGCTTGCCGCTACGTTTCAAGGGAT  338

Query  313  GTTACGAACTATATTGATATGGACAAAGTGGTTTACGTTGCTCGTTCTTGCGGCAAGAAG  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  339  GTTACGAACTATATTGATATGGACAAAGTGGTTTACGTTGCTCGTTCTTGCGGCAAGAAG  398

Query  373  ATTCCCTCCGGTTATAAATGTGGAAGT  399
            |||||||||||||||||||||||||||
Sbjct  399  ATTCCCTCCGGTTATAAATGTGGAAGT  425


 Score =  178 bits (96),  Expect = 5e-44
 Identities = 100/102 (98%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  398  GTTACACCATTCCGGCGGCTTAAAAAGGAAGGAGACCAACAGAATTTGGATTTGCTATAA  457
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  503  GTTACACCATTCCGGCGGCTTAAAAAGGAACGAAACCAACAGAATTTGGATTTGCTATAA  562

Query  458  AAATTAATAAAACGTATTAGTATCTGAATAATGATGATGATG  499
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  AAATTAATAAAACGTATTAGTATCTGAATAATGATGATGATG  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5