BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491332
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33540.1 | Symbols: | metallo-beta-lactamase family protein... 1810 0.0
> AT4G33540.1 | Symbols: | metallo-beta-lactamase family protein
| chr4:16130824-16133960 FORWARD LENGTH=1408
Length=1408
Score = 1810 bits (980), Expect = 0.0
Identities = 1141/1217 (94%), Gaps = 18/1217 (1%)
Strand=Plus/Plus
Query 1 AGAGACGAGAATCAATCACCAGTCTCATGGCTTCAGCTTCTTTCCCTGCGATTTCTTCGC 60
||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 33 AGAGACGAGGATCAATCACCATTCTCATGGCTTCAGCTTCTTTCTCTGCGGTTTCTTCGC 92
Query 61 TCTCGTATCACTTCCGTTCAAAAGAAGCCATCTTTTCATCGAAAGCTTCCTCTTTTAGTT 120
|||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 93 TCTCGTATCAATTCCGTTCAAAAGAAGCGATCTTTTCATCGAAAGCTTCCTGTTTTAGCT 152
Query 121 CGACGGCTTTATCAGGAAGGAGAGTATTTGGTGGATCTGTCAAAGCAGCTCATGTGACAA 180
||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||
Sbjct 153 CGACGGCTTTATCAGGAAGGAGAGT-GTT--TGGATCTATCAAAGCAGCTCAAGTGACAA 209
Query 181 GCCATCAGAACCCTCGACGACGCTCTCAGAACGTCGAAGGAGATATATTCGTCGACAATA 240
||||| |||| ||| || |||| ||||||||||||||||||||||||| || |||||||
Sbjct 210 GCCATGAGAATCCTAGAAGACGAACTCAGAACGTCGAAGGAGATATATTTGTTGACAATA 269
Query 241 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGAAATTATTCACTCGAGTGGACA 300
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 270 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGGATTTATTCACTCGAGTGGACA 329
Query 301 ACATGTCCGCGGTTACTAAA-CAACCAGCCTGTAAGGAGGAAAGACTGAATGCTCTTCAG 359
||||||| |||||||| ||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 330 ACATGTCTGCGGTTAC-AAAGCAACCAACTTGTAAGGAGGAAAGACTGAATGCTCTTCAG 388
Query 360 GCCTTACTATCATGTCCGACGGGCTCTATTCGCACTGAAACTCCACCTGCTGACATAGGG 419
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 389 GCCTTACTATCTTGTCCGACGGGCTCTATTCGCACTCAAACTCCACCTGCTGACATAGGG 448
Query 420 GAAGCTCAAGAGACCTTTCCACTTGCAGTGGACAAAGACACACTTCCTGGTGTTTTTCAT 479
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 449 GAAGCTCAAGAGACCTTTCCACTTGTAGTGGACAAAGACACACTTCCTGGCGTTTTTCAT 508
Query 480 TGTGGATTTCATTCCAAGAAATCCTACGGAGCAACTTCCTACCTGATCCTTCATCGTGAG 539
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 509 TGTGGATTTCATTCCAAGAAATCGTATGGAGCAACTTCTTACCTGATCCTTCATCGTGAG 568
Query 540 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTCGAAAGATTGAGATG 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 569 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTGGAAAGATCGAGATG 628
Query 600 ATGGGTGGTGTTCGCTACATCTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 659
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 629 AAGGGTGGTGTTCGCTACATGTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 688
Query 660 TGGGCAGATC-GATTCAAGTCTACTAGAATTCTGCATTTTGAAGATGTTGAACCTTCGAC 718
|||||||| | ||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 689 TGGGCAGA-CAGATTCAAGTCTACCAGAATTCTGCATTCTGATGATGTTGAACCTTCGAC 747
Query 719 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 807
Query 779 GCTTATACACACTCCCGGTCATTCAGAAGGATCAGTGTGCCTGTTCCATAAGTCTCTCAA 838
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 808 ACTTATACACACTCCTGGTCATTCAGAAGGATCAGTGTGCATGTTCCATAAGTCCCTCAA 867
Query 839 GGCATTATTCACTGGAGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GGCATTATTCACTGGCGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 927
Query 899 GTATAATCACGGGTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 958
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GTACAATCACGGTTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 987
Query 959 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGAAGAGAA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 988 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGACGAGAA 1047
Query 1019 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTACTTTAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1048 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTCCTTTAG 1107
Query 1079 CAAATCCGGGAAAGCTTAAGAAGACAAACTTTGTATGCTGATTCTAGACCGGTGAACCAA 1138
||||||||||||||||||||| | | |||||||||||||| |||||| || |||
Sbjct 1108 CAAATCCGGGAAAGCTTAAGAT-A-----T--GTATGCTGATTCTAAACCGGTTAATCAA 1159
Query 1139 ACTAAACCACCAGACTGAATGTCTCTTCGGTCTGACTTGTTTGTGTGTCAGTTAGTTCCC 1198
||||||||| ||| |||||||||| ||| |||||| || | |||||||||||||||||
Sbjct 1160 ACTAAACCA---GACCGAATGTCTCTACGGCCTGACTGGTCTATGTGTCAGTTAGTTCCC 1216
Query 1199 ACGTGAGTGATGTATTT 1215
||| |||||||||||||
Sbjct 1217 ACGCGAGTGATGTATTT 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5