BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491350
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33400.1 | Symbols: | Vacuolar import/degradation, Vid27-re... 3465 0.0
AT3G19240.1 | Symbols: | Vacuolar import/degradation, Vid27-re... 110 8e-23
> AT4G33400.1 | Symbols: | Vacuolar import/degradation, Vid27-related
protein | chr4:16077917-16080521 REVERSE LENGTH=2321
Length=2321
Score = 3465 bits (1876), Expect = 0.0
Identities = 2130/2249 (95%), Gaps = 31/2249 (1%)
Strand=Plus/Plus
Query 1 ACGCTCTTCT-TCTTCCTTCTTCAACTTCCCACCTTCATTTGAATAATCTCATTGCCGTT 59
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 ACGCTCTTCTCTCTT-CTTCTTCAACTTCCCACCTTCGTTTGAATAATCTCATTGCCG-- 71
Query 60 ATCTCAGATTCTCTCTAGCTCTTTCCATTTCCAGGATTCTTCGATATGGGAGCAACCCAC 119
| | |||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 72 -T-T---ATTCTCTCTAGCTCTTCCCATTTCCAGGATTCTTCGATATGGGAGCATCTCAC 126
Query 120 AGTCATGAAGATCTGGAGATCTGTTCTTCagacgaggatgaatatgaagaatatgaagaa 179
|||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct 127 AGTCATGAAGATCTAGAGATCTGTTCCTCCGATGAAGATGAATATGAAGAATATGAAGAA 186
Query 180 ggaagagacggacaagaagaggaagagacGTTCCAGGACTCGAGGGACCATACGTTAGGC 239
|||||||| ||| | ||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 187 GGAAGAGAGGGAGAGGAAGAGGAAGAGACGTTTCAGGACTCGCGGGATGATACGTTAGGT 246
Query 240 ATTTCTTCCTCC---GCTCGTCGTCTCCGGCCTAAAGCTCCTTCATCATCACTTGACGAC 296
|| ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 247 ATATCTTCCTCCGGTGGTCGTCGTCTCCGGCCTAAATCTCCTTCATCATCACTCGACGAC 306
Query 297 GTTGAGGCAAAACTCCAAGCTCTGAAGCTGAAATACCAATCGACG-GA--AGCCCCGTCT 353
|||||||||||||||||||| |||||||||||||||| || |||| | ||||||||||
Sbjct 307 GTTGAGGCAAAACTCCAAGCCCTGAAGCTGAAATACCCATTGACGCAATCAGCCCCGTCT 366
Query 354 ACTCAGAACTCAGCTCGGCTTTTCCGCTACATCAATGGAAACACTCCTAAAGCCAAATGG 413
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 367 ACTCAGAACTCAGCTCGGCTTTTCCGCTACATCAATGGCAACACTCCCAAAGCCAAATGG 426
Query 414 GTCACAGCTGAGAAACTGACTGCTTATTGTTTCGTTAAGACTAACAAAGGAGATGAAGAT 473
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 GTCACAGCTGAGAAACTGACTGCTTATTGTTTCGTCAAGACTAACAAAGGAGATGAAGAT 486
Query 474 GATGAAGACGACGATGAGAATGGAGATGTGGACAACGAATGGTGGGTTTTGAAAGTCGGA 533
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 487 GATGAAGACGACGATGAGAACGGAGATGTGGAAAACGAATGGTGGATTTTGAAAGTCGGA 546
Query 534 AGCAAGATCCGTGAAAAGGTTTCAGATGAAATGCAATTGAAGGCTTATAAAGATCAACGC 593
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 547 AGCAAGATCCGTGAAAAGGTATCAGATGAAATGCAATTGAAAGCTTATAAAGATCAACGC 606
Query 594 CGTGTTGATTTCGTTGCTAAAGCTGTTTGGGCTATGAAATTCGCCAGCAGTGAAGATTTT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CGTGTTGATTTCGTTGCTAAAGCTGTTTGGGCTATGAAATTCGCCAGCAGTGAAGATTTT 666
Query 654 TCGGTTTTTGTAAGCAGCTATAACAATTGCTTGTTTGAGAACAATCATGGGGTTGAGTTT 713
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 667 TCGGTTTTTGTAAGCAGCTATAACAATTGCTTGTTTGAGAACAATCATGGTGTTGAGTTT 726
Query 714 AATGAGGCCAATAAGGCAAAAATCTATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAG 773
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 AATGAGGCTAACAAGGCAAAAATCTATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAA 786
Query 774 GCTGCTGATGATTCCATGTGGGAAGATGCTGATGATATTTTGCTTCAAAGCCCAGGAGGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCTGCTGATGATTCCATGTGGGAAGATGCTGATGATATTTTGCTTCAAAGCCCAGGAGGA 846
Query 834 GGATCTGCAACCCCGGCGAGAGATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTACA 893
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGATCTGCAACTCCGGCTAGAGATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTACA 906
Query 894 AGTGAGGGCATACACAGCTTAGCTCTAGGTGCTTTAGATAACAGCTTTCTTGTGGGAGAT 953
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 907 AGTGAGGGCATACATAGCTTAGCTCTAGGTGCTTTAGATAATAGCTTTCTAGTTGGAGAT 966
Query 954 TCTGGTATTCAGGTTTTCAAGAACATGAGGCAGGGGATTCAAGGGAAAGGTGTTTGTGTT 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 967 TCTGGTATTCAGGTTTTCAAGAACATGAGACAGGGGATTCAAGGGAAAGGTGTTTGTGTT 1026
Query 1014 AACTTTGAACCTGGTTATGGGCGGGCTCATTCCTCAGCACCGAAGAAGGCTCTTCTCATG 1073
|||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1027 AACTTTGAGCCTGGTTATGGTCGAACTCATTCTTCAGCACCGAAGAAGGCTCTTCTCATG 1086
Query 1074 AGAGCTGAGACTAACATGCTGCTCATGAGTCCTATGAGCCAAACGCCTCATTCACGAGGA 1133
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 AGAGCTGAGACTAATATGCTGCTCATGAGTCCTATGAGCCAAACGCCTCATTCACGAGGT 1146
Query 1134 ATCCATCAGCTCGACATTGAAACCGGGAAGGTTATTTCGGAGTGGAAGTTTGAGAAAGAT 1193
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1147 ATCCATCAGCTTGACATTGAAACCGGGAAAATTATTTCAGAGTGGAAGTTTGAGAAAGAT 1206
Query 1194 GGAGTGGATATCTCTATGAGTGACATTACTAATGATGGTAAAGGAGCTCAATTGGACCCA 1253
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1207 GGAGTGGATATCTCTATGAGTGACATTACTAATGATGGTAAAGGTGCTCAATTGGATCCA 1266
Query 1254 TCTGCGTCAACGTTTCTGGGTCTGGATAACAATAGGCTTTGCAGGTGGGATATGCGTGAC 1313
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TCTGCGTCAACGTTTCTTGGTCTGGATAACAATAGGCTTTGCAGGTGGGATATGCGTGAC 1326
Query 1314 CGATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCCAGTCTTGAATTGGGCACAG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CGATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCCAGTCTTGAATTGGGCACAG 1386
Query 1374 GGGCATCAGTTTTCTAGAGGGACTAACTTCCAGTGCTTTGCAACTACTGGTGATGGCTCA 1433
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1387 GGGCATCAGTTTTCTAGAGGGACTAACTTTCAGTGCTTTGCAACTACTGGTGATGGCTCA 1446
Query 1434 ATTGTTGTTGGCTCTCTTGATGGCAAGATTAGACTCTACTCTAGCAACACTATGAGGCAG 1493
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1447 ATTGTTGTTGGCTCTCTTGATGGCAAAATTAGACTCTACTCGAGCAACACTATGAGGCAG 1506
Query 1494 GCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTAACTCATGTGGATGCTACATTCGAT 1553
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1507 GCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTTACTCATGTGGATGCTACATTCGAT 1566
Query 1554 GGGAAATGGATTGTTGGTACAACTGACACATACTTGATTGTTATCTGTACACTTTTCACT 1613
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1567 GGGAAATGGATTGTTGGTACAACTGACACATATTTGATTGTTATCTGTACCCTTTTCACT 1626
Query 1614 GACAAAAGTGGCAAAACAAAGACTGGCTTCGAGGGTCGCATGGGAAATAAGATTGCCGCA 1673
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1627 GACAAAAGTGGCAAAACAAAGACCGGCTTCGAGGGTCGCATGGGAAATAAGATTGCCGCA 1686
Query 1674 CCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACATTTAGCTGGATCTGACAACAAGTTC 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 CCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACATTTAGCTGGATCTGACAACAAGTTC 1746
Query 1734 CGCAATGCTCAGTTTTCTTGGGTCACAGAGGATGGGAAACAGGAGCGTCATGTGGTAGCA 1793
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1747 CGCAATGCTCAGTTTTCTTGGGTCACGGAGGATGGGAAACAGGAGCGTCATGTGGTAGCT 1806
Query 1794 ACCGTTGGAAAGTTCAGTGTGATATGGAACTTTCAGCAAGTGAAGAATGGATCTCATGAA 1853
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1807 ACTGTTGGCAAGTTCAGTGTGATATGGAACTTTCAGCAGGTGAAGAATGGATCTCATGAA 1866
Query 1854 TGCTACCATGATCAAGAAGGGCTGAAGAAATGCTACTGCTACAAGATAGTTCTGCGAAAT 1913
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1867 TGCTACCATGATCAGGAAGGGCTGAAGAAATGCTACTGCTACAAGATAGTCCTTCGAAAT 1926
Query 1914 GAATCTATCGTGGACAGTCGCTTCATGAATGACAACTTTGCAATCTCCGGTTCACCTGAA 1973
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1927 GAATCTATAGTGGACAGTCGCTTCATGAATGACAACTTTGCAATCTCTGGTTCACCTGAA 1986
Query 1974 GCGCCTTTGGTCATTGCAACTCCCATGAAAGTCAGCTCTTTTAGCTTATCCAGCAAGCGA 2033
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1987 GCGCCTTTGGTCATTGCAACGCCTATGAAAGTCAGCTCTTTCAGCTTATCCAGCAAGCGA 2046
Query 2034 TGAAACAAGCAAGTGATGGACCGGACCACTAGCTCTTTTAATTTAAATTCTATTCTATTT 2093
|||||||||||||||||||||||||||||||| | |||| |||| ||||||| |||||||
Sbjct 2047 TGAAACAAGCAAGTGATGGACCGGACCACTAGTTATTTTCATTTGAATTCTAGTCTATTT 2106
Query 2094 GTAACCATGTGAAATTTCATTGTTCTGGCT----G-----T---A--TTCAGAGA-AACG 2138
|||||||||||||||| || |||||||||| | | | |||||||| || |
Sbjct 2107 GTAACCATGTGAAATTACAATGTTCTGGCTCTTAGAACGATGTTAGATTCAGAGATAA-G 2165
Query 2139 ACATCTAGCAATGTTGCTAAACTACTTTGGTCTGGCTTTGACTTTTAAGATGTTTGGTCG 2198
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2166 ACACCTAGCAATGTTGCTAAATTACTTTGGTCTGGCTTTGACTTTTAAGATGTTTGGTCG 2225
Query 2199 TATTGTAGACGttttgttttttcgttttC 2227
||||||||||||||| |||||||||||||
Sbjct 2226 TATTGTAGACGTTTTATTTTTTCGTTTTC 2254
> AT3G19240.1 | Symbols: | Vacuolar import/degradation, Vid27-related
protein | chr3:6664250-6666558 FORWARD LENGTH=2215
Length=2215
Score = 110 bits (59), Expect = 8e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 738 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAGGCTGCTGATGATTCCATGTGGGAA 797
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 TATGGTAAAGATTTCATTGGGTGGGCTAATCCTGAGGCTGCTGATGATTCTATGTGGGAG 841
Query 798 GATGCTGA 805
||||||||
Sbjct 842 GATGCTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5