BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491388 Length=1604 Score E Sequences producing significant alignments: (Bits) Value AT4G33030.1 | Symbols: SQD1 | sulfoquinovosyldiacylglycerol 1 |... 2383 0.0 > AT4G33030.1 | Symbols: SQD1 | sulfoquinovosyldiacylglycerol 1 | chr4:15935416-15937807 FORWARD LENGTH=1840 Length=1840 Score = 2383 bits (1290), Expect = 0.0 Identities = 1518/1622 (94%), Gaps = 39/1622 (2%) Strand=Plus/Plus Query 1 AGGTGAGTGTGTTTGATAGAATAAAGAACAAACCTTGAAAATGGCGCATCTACTTTCAGC 60 |||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 126 AGGTGAATTTGTTTGATAGAATCAAGAACAAACCTTTAAAATGGCGCATCTACTTTCAGC 185 Query 61 TTCATGCCCTTCTGTTATCTCACTT------AGCAGCAGCAAGAATTCAGTTAAACCCTT 114 |||||||||||| |||||||||||| ||||||||||||||||||||||| || || Sbjct 186 TTCATGCCCTTCAGTTATCTCACTTAGCAGCAGCAGCAGCAAGAATTCAGTTAAGCCGTT 245 Query 115 TGGTTT-AGGGAAAACCTTCTCCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 173 | |||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 246 T-GTTTCAGGGCAGACCTTCTTCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 304 Query 174 TTCTCTTCCAAGACAAGAAACCGAGAAGAAGTTGCGTTTTCCGAGCAACTGCTACACCTA 233 ||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||| ||||| Sbjct 305 TTCTCTTCCAAGAGAAGAAACCGAGAAAAAGCTGCGTTTTCAGAGCAACTGCTGTACCTA 364 Query 234 TAACCCAACAAGCACCACCCGAAACATCTACCGATAACTCATCGTCTAAACCAAAGCGTG 293 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 365 TAACCCAACAAGCACCACCCGAAACATCTACCAATAACTCATCCTCTAAACCAAAGCGTG 424 Query 294 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 484 Query 354 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGGCGTCTTTTCGACCACCAGCTTG 413 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 485 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGACGTCTTTTCGACCACCAGCTTG 544 Query 414 GACTTGAATCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 473 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GACTTGAGTCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 604 Query 474 TGACAGGGAAATCAATTGAGCTGTACGTTGGGGATATCTGTGATTTCGAATTCTTAGCTG 533 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 605 TGACAGGGAAATCAATTGAGTTGTACGTTGGTGATATCTGTGATTTCGAATTCTTAGCTG 664 Query 534 AGTCTTTCAAGTCTTTTGAGCCCGATTCAGTTGTCCACTTCGGGGAACAGAGATCCGCTC 593 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 665 AGTCTTTCAAGTCTTTTGAGCCGGATTCAGTTGTCCACTTTGGGGAACAGAGATCCGCTC 724 Query 594 CTTACTCGATGATTGACCGGTCCAGAGCCGTGTT-TACACAGCACAACAATGTGATTGGG 652 |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 725 CTTACTCGATGATTGACCGGTCCAGAGCAGT-TTATACACAGCACAACAATGTGATTGGG 783 Query 653 ACTCTCAATGTTCTCTTTGCTATCAAAGAGTTCGGAGAAGAATGCCATCTTGTAAAACTC 712 |||||||| |||||||||||||| |||||||| ||||| || || |||||||||||||| Sbjct 784 ACTCTCAACGTTCTCTTTGCTATAAAAGAGTTTGGAGAGGAGTGTCATCTTGTAAAACTT 843 Query 713 GGGACGATGGGTGAGTACGGAACTCCAAATATCGATATCGAGGAAGGTTATATAACGATA 772 ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 844 GGGACGATGGGTGAGTATGGAACTCCAAATATTGACATCGAGGAAGGTTATATAACCATA 903 Query 773 ACCCACAATGGTAGAACTGACACTTTGCCATACCCGAAGCAAGCTAGCTCCTTCTATCAT 832 |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 904 ACCCACAACGGTAGAACTGACACTTTGCCATACCCCAAGCAAGCTAGCTCCTTTTATCAT 963 Query 833 CTTAGCAAAGTTCACGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 892 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 CTTAGCAAAGTTCATGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 1023 Query 893 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 1083 Query 953 GAGGAACTCCGTAACCGACTAGATTACGATGCTGTGTTCGGTACAGCACTTAACCGGTTC 1012 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1084 GAGGAACTCCGTAACCGACTGGATTACGATGCTGTGTTTGGTACAGCACTTAACCGGTTC 1143 Query 1013 TGTGTGCAAGCCGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACAAGA 1072 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1144 TGTGTGCAAGCTGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACGAGA 1203 Query 1073 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCGAACCCGGCA 1132 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1204 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCAAACCCGGCA 1263 Query 1133 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTCACTGAACAGTTTTCAGTCAATGAACTG 1192 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1264 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTTACAGAACAGTTTTCAGTCAATGAACTG 1323 Query 1193 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTTGACGTGAAAAAGATGACGGTG 1252 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1324 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTAGACGTGAAAAAGATGACGGTG 1383 Query 1253 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACAAAGCTGATG 1312 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1384 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACTAAGCTGATG 1443 Query 1313 GAACTAGGACTTGAGCCTCACTATCTATCTGAGTCACTTCTTGATTCGTTGCTCAACTTT 1372 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1444 GAACTTGGACTTGAGCCTCACTATCTATCTGACTCACTTCTTGATTCGTTGCTCAACTTT 1503 Query 1373 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTACTGTTTCTTGGAAA 1432 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1504 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTAGTGTTTCCTGGAAG 1563 Query 1433 AAGATTGGCGTCAAGACTAAGTCCATGACCGCCTAAAGTGCAGATCAATATTACAC---- 1488 |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 1564 AAGATTGGCGTCAAGACTAAGTCCATGACCACATAAAGTGCAGACCAATATTACACATAA 1623 Query 1489 G-AT-G-T---G-------T--TGT-TTGT--G--ATCTTCAAACTTCATTTGAGCAAAA 1528 | | | | | | ||| |||| | ||||||||||||||||| |||||| Sbjct 1624 GGAGAGATTATGAAAGAGATGATGTGTTGTTTGGTATCTTCAAACTTCATTTCTGCAAAA 1683 Query 1529 GACTTGCTAG-CTTAAGAGGTTTTTGTCCATC---CATTGTGCAGGTTTTTTGCTATTAG 1584 |||||||||| ||||||||||||| |||||| ||||||||||||| ||| | |||| Sbjct 1684 GACTTGCTAGGCTTAAGAGGTTTT-GTCCATATTACATTGTGCAGGTTCTTTAATGTTAG 1742 Query 1585 AT 1586 || Sbjct 1743 AT 1744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79216460010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5