BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491396
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32980.1 | Symbols: ATH1 | homeobox gene 1 | chr4:15914722-1... 3371 0.0
> AT4G32980.1 | Symbols: ATH1 | homeobox gene 1 | chr4:15914722-15918044
REVERSE LENGTH=2268
Length=2268
Score = 3371 bits (1825), Expect = 0.0
Identities = 2127/2266 (94%), Gaps = 47/2266 (2%)
Strand=Plus/Plus
Query 1 AGGGTCCCTTCCCTAATTTAAAGCCTGCAACAGAAATGAGTGCACTTCTCTGTAGTAAAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGTCTCTTCCCTAATTTAAAGCCTGCAACAGAAATGAGTGCACTTCTCTGTAGTAAAC 60
Query 61 AGTAACACATCGGTCTTCTTCATGTCTTTGGATTTCTTTTTCGGATTTGGATTCTGTTTC 120
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 61 AGTAACACATCGGTCTTCTTCATGTCTTTGGATTTCTTTTTTGGATTTCGATTCTGTTTC 120
Query 121 AACCATATA-TTTCTTTAGATAAATACTAGATGACATTCTTCATCTCTTTCTCTGTGAAC 179
||||||||| ||||||||||| ||| || | | | ||||||||||||||| |||||
Sbjct 121 AACCATATATTTTCTTTAGAT-AATTTTA-CT-AGA---TTCATCTCTTTCTCTATGAAC 174
Query 180 AACATTTTAAATAAATGGA-ATTTCAAGAAAG-AAAT-TATATAAGATTTTCTTGATTCT 236
|||||||||||||||| || |||| ||||||| | | ||||||||||||||||||||||
Sbjct 175 AACATTTTAAATAAAT-GACATTTTAAGAAAGTGATTATATATAAGATTTTCTTGATTCT 233
Query 237 GATTTATCtttttttttGGTCGGAAGATCTTAAAGATATGAAAATGGATTCGTGTCATAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GATTTATCTTTTTTTTTGGTCGGAAGATCTTAAAGATATGAAAATGGATTCGTGTCATAA 293
Query 297 ACAGAGGGAGCTCCGTACCTGATTTGGCCCTCCttcttttcaacttcttctttcttgaat 356
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACAGAGGCAGCTCCGTACGTGATTTGGCCCTCCTTCTTTTCAACTTCTTCTTTCTTGAA- 352
Query 357 tttttaaa---ata-ttttcccctcaaaaataaaaagttttGGTTTGATCATTTAGTTAT 412
| ||||| || |||||||||| | ||| | || |||||||||| | ||||||||||
Sbjct 353 -TATTAAAGTTGTATTTTTCCCCTCGATAAT-ACAACTTTTGGTTTGTTTATTTAGTTAT 410
Query 413 AAAATGTTGCTATTTGTTGATCTAGAACTCTGAATCTTTTGGTGAGGCAGATGATGAAGA 472
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 411 AAAATGTTGCTATTTGTTGATCTAGTGCTCTGAATCTTTTAGTGAGGCAGATGATGAAGA 470
Query 473 TTCTGGACTTCTTCATGAAATTGTAATAA-AAGTAAGAACATAGAGAAGCTGCGGAATGA 531
|| || | |||||||||||||| | ||| || ||||||||||||||||||||||||||
Sbjct 471 TTATGAATTTCTTCATGAAATTATTGTAAGAA-AAAGAACATAGAGAAGCTGCGGAATGA 529
Query 532 AAGTACACTGTTCTTTCACGGAGAAAGAAGAGAAATAAGCATTTTCTTCTTCTTCAGTTT 591
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 530 AAGTACACTGTTCTTTCACGGAGAAAGAAGATAAATAAGCATTATCTTCTTCTTCAGTTT 589
Query 592 TTAACACACATTTTGGAAATTTTGGTGTAAAAATTCTCTTTGGAACGTTTTGTTGTCTGA 651
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 590 TTAACACACATTTTGGAAATTTTGATGTAAAAATTCTCTTTGGAACGTTGTGTTGTCTGA 649
Query 652 AATCTTCCCAAAGGTTCTATCAGTAGAAGAAGGATAAAGGTTCTTAGAAACCCAATGG-- 709
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 650 AATCTTCCCAAAGGTTCTATCAGAAGAAGAAGGATAAAGTTTCATAGAAACCCAATGGAC 709
Query 710 -------ACAACAACAACACTTTTAGTTCTCTGGATAATGCCATGACTAACCAAAATCCT 762
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 710 AACAACAACAACAACAACACTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCT 769
Query 763 CTTCTCATGGATTTTATTCCTTCAAGAGAAGATTCAACTTCATTCTCAACAATGCTTCCA 822
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTTCTCATGGATTTTATACCTTCAAGAGAAGATTCAACTTCATTCTCAACAATGCTTCCA 829
Query 823 TGGAACT-CCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATCTTCAATTCTAT 881
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 830 TGGAA-TACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTAT 888
Query 882 GCTGACTAACAAATACTTATCATCTTCTTCACGGTCTATCGATGTTCAAGATAACCGCAA 941
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 889 GCTGACTAACAAATACTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAA 948
Query 942 TGTCGAAAGCTTTGAGTTCATGGctcctcct-c-c-tcctcctccACTTCATCCTTTGGA 998
| | |||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 949 --T-----G--TTGAGTTCATGGCTCCTCCTCCTCATCCTCCTCCACTTCATCCTTTGGA 999
Query 999 TCATTTAAGGCCCTATGATGATTCCTCAAACAACATGTGGGGTTTTGAGGCAAATAGTGT 1058
||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1000 TCATTTAAGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGA 1059
Query 1059 GTTTCAGACATATTCAGGTGTTGTTGGTCCAAGTGAACCAATAATGTCTACTTTCGGTGA 1118
||||||| ||| ||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1060 GTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGATGTCTACATTCGGTGA 1119
Query 1119 AGAAGATTTTCCGTTCCTGATTTCGAATAGAAGAAACAACGAGCTTTCATTGAGTCTTGC 1178
||||||||| ||||| || |||||||||| ||||||||| |||||||||||||||||||
Sbjct 1120 AGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTG- 1178
Query 1179 CA-CAGATGTTTCTGATGAATGCTCGGAGATAAGTCTTTGTGCTGCTACTAGATTAGCCT 1237
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1179 CATCAGATGTTTCTGATGAATGCTCGGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCT 1238
Query 1238 CAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAATGTTGTCACTCAAGGTTTCT 1297
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1239 CAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCT 1298
Query 1298 CTCAACTTATATTTGGCTCAAAGTACCTTCACTCTGTTCAAGAAATACTATCTCATTTCG 1357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1299 CTCAACTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCG 1358
Query 1358 CCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGCCAGGGGCTGCTAGTTCGGCCT 1417
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1359 CCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAGCTGCTAGTTCAGCCT 1418
Query 1418 TTACTTCACGTTTTGAGAATATTACCGAGTTTCTTGATAGCGATTCTAATAACTCGGAGG 1477
|||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||
Sbjct 1419 TTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGG 1478
Query 1478 CGGTTTTCGGATCTACATTTCAAAGAAGAGCATTAGAAGCTAAGAAAACCCATCTCCTGG 1537
||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1479 CGGGTTTCGGATCTACATTTCAAAGGAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGG 1538
Query 1538 ATCTTCTACAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTG 1597
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 ATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTA 1598
Query 1598 TATCAGCATTCCACGCTGCAACCGAGTTAGATCCGCAGTTACACACCCGGTTTGCCCTCC 1657
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1599 TATCAGCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCC 1658
Query 1658 AAACCATTTCTTTCTTATACAAGAACCTGAGAGAGAGAATCTGCAAGAAGATAATCTCTA 1717
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 AAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCAAGAAGATAATCTCTA 1718
Query 1718 TGGGATCTGTATTGGAGAGAGGCAAAGACAAGTCTCAAGAAAACTCTATGTTCCACCAGC 1777
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1719 TGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGC 1778
Query 1778 ATTGCCTTCTTCAGCAGCTGAAACGAAAGAACCATCAGATTTGGAGACCGCAACGAGGTT 1837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1779 ATTGCCTTCTTCAGCAGCTGAAACGAAAGAACCATCAGATTTGGAGACCTCAACGAGGTT 1838
Query 1838 TGCCTGAGAAATCTGTATCGGTTCTACGGACTTGGATGTTCCAAAACTTCCTTCACCCTT 1897
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1839 TGCCTGAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTT 1898
Query 1898 ACCCGAAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGG 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 ACCCGAAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGG 1958
Query 1958 TATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGATGATAGAAGAGATGT 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 TATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGATGATAGAAGAGATGT 2018
Query 2018 ATGCGGAAATGAACAAGAGGAAGCTAAACAACAGTCACCTTCAACCCAACGGAGCAACTC 2077
||||||||||||||||||||||||| || ||||||||| |||||||||||||| ||||||
Sbjct 2019 ATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTC 2078
Query 2078 TTCGAATGCCAAAATCTGTTATGATGAGCCAAGCAATGCAAAAATAAGACAACAATTGTG 2137
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2079 TTCGAATGCCAAAATCTGTTATGATGAGCCAAGCAATGCATAAATAAGACAACAATTGTG 2138
Query 2138 TT-ACCAACTT-GTGATAATTAGGCAATTGCTACTATATGATTGCCCAAAACCTAAAGCA 2195
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2139 TTTACCAACTTTGTGATAATTAGGCAATTGCTACTCTATGATTGCCCAAAACCTAAACCA 2198
Query 2196 TGTACGACTATCATTACGTATGTTATAATTGTATATACAACTTCTT 2241
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2199 TGTACGACTATCATTACGTATGTTATAATTGTATATACAACTCCTT 2244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5