BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491398 Length=939 Score E Sequences producing significant alignments: (Bits) Value AT4G32960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1467 0.0 > AT4G32960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:15908618-15910180 REVERSE LENGTH=1001 Length=1001 Score = 1467 bits (794), Expect = 0.0 Identities = 894/942 (95%), Gaps = 7/942 (1%) Strand=Plus/Plus Query 2 ACATCGACGGCGAATGGAGGAAGACAGAGTGGCCGTGACCGGAGTAGGAGCGACTCGATA 61 |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 27 ACATCGGCGGCGAATGGAGGAAGAGAGAGTGGCCGTGACCGGAGTAGGAACGACTCGATA 86 Query 62 CGCGCTTAAACCGGGGCGTATAAAAAGCGAAGACATACTCATCTGCATCGATGTAGACGC 121 |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct 87 CGCGCTTAAACCGGGGCGTATAAAAAGCGAGGACATACTCATCTGTATCGATGTAGATGC 146 Query 122 GGAATCGATGGTGGAGATGAAGACCACTGGAACAAACGGTAGGCCTTTGATCAGGATGGA 181 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 147 AGAATCGATGGTGGAGATGAAGACCACTGGAACTAATGGTAGGCCTTTGATCAGGATGGA 206 Query 182 GTGCGTCAAGCAAGCCATTATTCTCTTCATCCACAACAAGCTCTCCATTAATCCCGATCA 241 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 207 GTGCGTCAAGCAAGCCATTATTCTCTTCATTCACAATAAGCTGTCCATTAATCCTGATCA 266 Query 242 TCGCTTTGCTTTCGCTACTCTCGCCAAATCAGCCGCCTGGCTTAAAAAGGAGTTCACCAG 301 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 267 TCGCTTTGCTTTCGCTACGCTCGCCAAATCAGCCGCTTGGCTTAAAAAGGAGTTCACAAG 326 Query 302 CGATGCTGAATCTTCTGTTGCTTCCCTTAGAGGATTGTCACCTAATAAATCCTCTAGTCG 361 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 327 TGATGCTGAATCTGCTGTTGCTTCCCTTAGAGGATTGTCAGGTAATAAATCCTCTAGTCG 386 Query 362 AGCGGATCTCACACTTCTCTTCCGGGCTGCAGCTCAGGAAGCCAAAGTTTCTAGAGCACA 421 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 387 AGCGGATCTCACACTTCTCTTCCGAGCAGCAGCTCAGGAAGCCAAAGTTTCCAGAGCACA 446 Query 422 TAACCGAATTTTCAGGGTGATTCTCATATACTGCAGGTCATCTATGAGACCAACCCATGA 481 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 447 GAACCGAATTTTCAGGGTGATTCTCATATACTGTAGGTCATCTATGAGACCAACCCATGA 506 Query 482 GTGGACCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 541 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 GTGGCCCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 566 Query 542 TCCTGATAATTGTCCTCAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 601 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 567 TCCTGATAATTGTCCACAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 626 Query 602 AGAGTATGAAGGTTACATATTTGAGAGTGGCCAAGGGCTTGCACGGTCTGTTTTCAAGCC 661 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 627 AGAGTATGAAGGTTACATATTTGAGAGCGGTCAAGGGCTTGCACGGTCTGTTTTCAAGCC 686 Query 662 CATGTCAATGTTGTTATCTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 721 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 AATGTCAATGCTGTTAACTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 746 Query 722 CAGGTCTCTTGCAAAGAAGGTGCCTGTGACTGAGGCGGCAAATGCTCTAGATCATCACAA 781 || ||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||| Sbjct 747 CATGTCTCTTGCAAAGAAAGTGCCTGTGACTGAGGCGGCAAGTGCTGTAGATCCTCACAA 806 Query 782 TGGGAACAACAATCAGATCATAAACTAATGAAAACACtttttttttttttttATGTATCT 841 ||||||||| | ||||||||||||||||||||| ||||||||||||||| || |||||| Sbjct 807 TGGGAACAATATTCAGATCATAAACTAATGAAA-CACTTTTTTTTTTTTCTT--GTATCT 863 Query 842 TTTGGTCATGACATGGTTGTAAGTTTCGCATGTGaaaaaaaTACTCAAAAC-T--AGTGA 898 |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 864 TTTGGTCATGACATGGTTGTGAGTTTCGCATGTGAAAAAAATACTCAAAACCTGTAGTGA 923 Query 899 CAACTTGTTCTAGATCCAT-AAGTAAGAAACTCAAATGTCCA 939 ||||||||||||||||||| |||||||||||||||||||||| Sbjct 924 CAACTTGTTCTAGATCCATCAAGTAAGAAACTCAAATGTCCA 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45914010358 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5