BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491400
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar pro... 2765 0.0
AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar pro... 1205 0.0
> AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing
enzyme | chr4:15900270-15903268 REVERSE LENGTH=1879
Length=1879
Score = 2765 bits (1497), Expect = 0.0
Identities = 1768/1890 (94%), Gaps = 53/1890 (3%)
Strand=Plus/Plus
Query 1 TCATTATATAAACAACGACAACGTATGTGT-TCTCCAATCAGAT-AAAAGATTCAATTTT 58
||||||||||||||||| || ||| | ||||||||||||| |||||||||||||||
Sbjct 1 TCATTATATAAACAACG----TGTCTGT-TCTCTCCAATCAGATAAAAAGATTCAATTTT 55
Query 59 ATTTAATAGTCTGCCCGGCGATaaaaaaaGATTCCTATCAACATCATCATCACTCGCCGG 118
|||| ||| |||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 56 ATTTGATA----GCCCGGCGAT-TAAAAAGATTCC--T----ATCATCATCACTCGCCGG 104
Query 119 CTAATGGCCACAACGATGACACGTGTCGCCGTCGGCGTCTTCCTTC-TTGCTCTCTTAGT 177
||||||||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||
Sbjct 105 CTAATGGCCACAACGATGACACGTGTCTCCGTCGGCGTCGTCC-TCTTTGTTCTCTTAGT 163
Query 178 CTCGCTGGTTGCCGTCTCCGCCGCGAGAAGCGGTCCTGATGATGTTATCAAACTCCCGTC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 164 CTCGCTGGTTGCCGTCTCCGCCGCGAGAAGCGGTCCTGATGATGTTATCAAACTCCCTTC 223
Query 238 GCAGGCTTCTCGCTTCTTCCGTCCTGCTCAAGACGACGACGATTCTAACTCCGGTACTAG 297
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 224 GCAGGCTTCTCGCTTCTTCCGTCCTGCTGAAAACGACGACGATTCTAACTCCGGTACTAG 283
Query 298 GTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTACAGGCATCAGGCTGATAT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTACAGGCATCAGGCTGATAT 343
Query 358 ATGCCATGCTTATCAACTTCTGAGGAAAGGTGGACTGAAAGAGGAGAATATTGTGGTATT 417
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 344 ATGCCATGCCTATCAACTTCTGAGGAAAGGTGGATTGAAAGAGGAGAATATTGTGGTATT 403
Query 418 TATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTATCAACAG 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTATCAACAG 463
Query 478 CCCTCATGGGAAGGATGTCTATCAAGGAGTTCCCAAGGATTATATTGGAGATGATGTTAA 537
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 464 CCCTCATGGAAAAGATGTCTATCAAGGAGTTCCCAAGGATTATACTGGAGATGATGTCAA 523
Query 538 TGTTGATAATCTATTTGCTGTGATCCTTGGAGACAAAACTTCTGTTAAAGGGGGAAGTGG 597
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 524 TGTTGATAATCTATTTGCTGTGATCCTTGGAGACAAAACTGCTGTTAAAGGGGGAAGTGG 583
Query 598 AAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGTGACCATGGTGG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGTGACCATGGTGG 643
Query 658 CCCTGGAGTTCTTGGGATGCCGACTTCTCCTTACCTATATGCAAATGATCTCAATGATGT 717
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCCTGGAGTTCTTGGGATGCCAACTTCTCCTTACCTATATGCAAATGATCTCAATGATGT 703
Query 718 ATTGAAGAAAAAACATGCTTCAGGAACCTATAAAAGCTTGGTGTTTTATCTCGAAGCTTG 777
|||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 704 CTTGAAGAAGAAACATGCTTTAGGAACATATAAAAGCTTGGTGTTTTATCTCGAAGCTTG 763
Query 778 TGAATCTGGAAGTATCTTTGAAGGGATTCTTCCAGAGGGTTTGAACATCTATGCCACAAC 837
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 764 CGAATCTGGAAGTATCTTTGAAGGGCTTCTTCCTGAGGGTTTGAACATCTATGCCACAAC 823
Query 838 TGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGAGGAACCTAGTCC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 824 TGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGAGGAACCCAGTCC 883
Query 898 TCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTGGATGGAAGATAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTGGATGGAAGATAG 943
Query 958 TGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACTTGTGAAAAGGAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACTTGTGAAAAGGAG 1003
Query 1018 GACTGCACCTGTTGGGTACTCTTATGGTTCTCATGTCATGCAATATGGCGATGTAGGACT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1004 GACTGCACCTGTTGGGTACTCTTATGGTTCTCATGTCATGCAATATGGCGATGTAGGAAT 1063
Query 1078 TAGCAAGGATAATCTCGATCTTTATATGGGAACAAACCCTGCCAATGACAATTTCACATT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1064 TAGCAAGGATAATCTCGATCTTTATATGGGAACAAACCCTGCCAATGACAATTTTACCTT 1123
Query 1138 TGTGGATGCCAATTCACTGAAGCCACCTTCAAGAGTTACAAACCAGCGTGATGCAGATCT 1197
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TGCGGATGCGAATTCACTAAAGCCACCTTCAAGAGTTACAAACCAGCGTGATGCAGATCT 1183
Query 1198 TGTCCATTTTTGGGAAAAGTACCGGAAAGCACCAGAAGGTTCCGCCAGGAAAACAGAAGC 1257
||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 1184 TGTTCATTTTTGGGAAAAGTACCGAAAAGCACCAGAAGGTTCAGCAAGAAAAACAGAAGC 1243
Query 1258 TCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCATGTTGACAATAGCGTGATACT 1317
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCATATTGACAATAGCGTGATACT 1303
Query 1318 CGTCGGAAAAATCTTGTTTGGCATTTCGAAAGGTCCTGAAGTGCTAAACAAAGTACGGTC 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1304 CGTCGGAAAAATCTTGTTTGGCATTTCGAGAGGTCCTGAAGTGCTAAACAAAGTACGGTC 1363
Query 1378 TGCTGGGCAACCGCTAGTCGATGACTGGAACTGCCTTAAAAATCTGGTGAGAGCTTTCGA 1437
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1364 TGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGAGCTTTCGA 1423
Query 1438 GAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCCTTTGCAAACAT 1497
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1424 GAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTTGCAAACAT 1483
Query 1498 CTGCAACGCAGGGATCCGAACTG-AGCAAATGGAGGAGGCAGCTTCACAGGCTTGTACCT 1556
|||||| |||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 1484 CTGCAATGCAGGGATTCAAA-TGGAGCAAATGGAGGAGGCAGCTTCACAGGCTTGTACCA 1542
Query 1557 CAATCCCACCTGGTCCTTGGAGCTCGCTTCACCGTGGATTCAGTGCATAGAAACCCTAAA 1616
|| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1543 CACTGCCAACTGGTCCTTGGAGCTCGCTTAACCGTGGATTCAGTGCATAGAAACCCTAAA 1602
Query 1617 CAC-TCTTCGCATTTGTTTATACTACCAAATCCCCAAATATTCCTATTTCGATTTGTAAT 1675
| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 1603 C-CGTCTTCGCATTTGTTTATACCACCAA-TCCCCAAATATTCCTATTTCGATTTGTTAT 1660
Query 1676 GATTAAATCATTATTCTCCCTGTATATCTCACTATCATTTCC-T----A-TGT--A-TTT 1726
|||||||||| ||||||| |||||||||||| |||||||||| | | ||| | |||
Sbjct 1661 GATTAAATCAGTATTCTCTCTGTATATCTCAGTATCATTTCCGTCGTCAGTGTGTAATTT 1720
Query 1727 --------G-AT-----ATGTACA-AATGCTTGTAGAAACTAAAGTTGAATGTATATTAC 1771
| || ||||||| || |||||||||| ||||||||||||||||| |
Sbjct 1721 CAAATTATGTATTTGCCATGTACAGAA-GCTTGTAGAA-CTAAAGTTGAATGTATAGAAG 1778
Query 1772 ATGTAAATTTTTAT-ATGTAAACTTGGGAGCTGTCAATCTTATGGATGGTTTACCTTTTG 1830
| | || || || ||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 1779 GTTTGTATATT-ATGATGTAAACTTGGGAGTTGTCAATCTCATGGATGGTTTACTTTTTG 1837
Query 1831 TAGCAGAAACAGCAGAAGAAAATAGTAAAA 1860
||||||||||||||||||||||||||||||
Sbjct 1838 TAGCAGAAACAGCAGAAGAAAATAGTAAAA 1867
> AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar processing
enzyme | chr2:11063301-11066028 REVERSE LENGTH=1640
Length=1640
Score = 1205 bits (652), Expect = 0.0
Identities = 1112/1331 (84%), Gaps = 43/1331 (3%)
Strand=Plus/Plus
Query 292 TACTAGGTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTA-CAGGCATCAGG 350
||||| |||||||||||| ||||||||||| |||||||| |||||||| | | |||||||
Sbjct 134 TACTAAGTGGGCTGTTCTCGTCGCCGGATCCAGCGGATACTGGAATTATC-GTCATCAGG 192
Query 351 CTGATATATGCCATGCTTATCAACTTCTGAGGAAAGGTGGACTGAAAGAGGAGAATATTG 410
| ||| | || ||||||||||| ||| ||| |||||||||| ||||||||||||||||||
Sbjct 193 CGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGGAGTGAAAGAGGAGAATATTG 252
Query 411 TGGTATTTATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTA 470
|||| |||||||||||||| ||||| || || | ||||||||||| |||||| ||||
Sbjct 253 TGGTGTTTATGTATGATGACATTGCGAAGAACGAGGAGAATCCAAGACCTGGAGTTATTA 312
Query 471 TCAACAGCCCTCATGGGA-AGGATGTCTATCAA-GGAGTTCCCAAGGATTATATTGGAGA 528
|||| || ||| || ||| ||||||||||| || ||||||||||||||||| | ||||||
Sbjct 313 TCAATAGTCCTAAT-GGAGAGGATGTCTAT-AATGGAGTTCCCAAGGATTACACTGGAGA 370
Query 529 TGATGTTAATGTTGATAATC-TATTTGCTGTGATCCTTGGAGACAAAACTTCTGTTAAAG 587
||| |||||||||||||| | |||| |||||||| |||||| ||||||| || ||||||
Sbjct 371 TGAAGTTAATGTTGATAA-CTTATTAGCTGTGATTCTTGGAAACAAAACGGCTCTTAAAG 429
Query 588 GGGGAAGT-GGAAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGT 646
| |||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| ||| |||
Sbjct 430 GAGGAAGTGGGAAA-GTTGTAGATAGCGGTCCAAACGATCATATCTTTATATACTATAGT 488
Query 647 GACCATGGTGGCCCTGGAGTTCTTGGGATGCCGACTTCTCCTTACCTATATGCAAATGAT 706
|| || ||||| || ||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 489 GATCACGGTGGTCCGGGAGTGCTCGGGATGCCAACTTCTCCAAACCTATATGCAAATGAT 548
Query 707 CTCAATGATGTATTGAAGAAAAAACATGCTTCAGGAACCTATAAAAGCTTGGTGTTTTAT 766
||||||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 549 CTCAATGATGTCTTGAAGAAAAAATATGCTTCAGGAACATATAAGAGCTTGGTGTTTTAT 608
Query 767 CTCGAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGATTCTT-CCAGAGGGTTTGAACAT 825
| || |||||||||||||||||||| |||||||| || || ||||||||||| || ||
Sbjct 609 TTGGAGGCTTGTGAATCTGGAAGTATTTTTGAAGGTCTT-TTACCAGAGGGTTTAAATAT 667
Query 826 CTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGA 885
|| || ||||||||||| || || |||||||| || |||||||| || || ||||||||
Sbjct 668 TTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTACTGTCCTGGAGA 727
Query 886 GGAACCTAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTG 945
||| ||||||||||| | |||||||| || ||||| |||||||| ||||||||||||||
Sbjct 728 GGATCCTAGTCCTCCTTCTGAGTATGAGACCTGTTTGGGTGACTTATACAGTGTTGCTTG 787
Query 946 GATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACT 1005
||| |||||||||| | ||||||||||| || |||||| ||||| ||||||||||| |
Sbjct 788 GATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCACGAGCAATATGAA-T 846
Query 1006 TG-TGAAAAGGAGGACTGCACCTGT-TGGGTAC-TCTTATGGTTCTCATGTCATGCAATA 1062
|| |||||| ||| |||||| | | ||| || ||||||||||||||||| ||| |||
Sbjct 847 TGGTGAAAAAGAGAACTGCAGGT-TCTGG-TAAGTCTTATGGTTCTCATGTTATGGAATT 904
Query 1063 TGGCGATGTAGGACTTAGCAAGGATAATCTCGATC-TTTATATGGGAACAAACCCTGCCA 1121
||| ||| ||||||| |||||||| || || | || ||| |||||| ||||| || || |
Sbjct 905 TGGAGATATAGGACTCAGCAAGGAGAAGCTTG-TCCTTTTTATGGGTACAAATCCAGC-A 962
Query 1122 -ATGACAATTTCACATTTGTGGATGCCAATTCACTGAAG-CCACCTTCAAGAGTTACAAA 1179
|||| || ||||| |||||| ||| |||||| | ||| || |||||||||||||||||
Sbjct 963 GATGAAAACTTCACCTTTGTGAATGAGAATTCAAT-AAGGCCGCCTTCAAGAGTTACAAA 1021
Query 1180 CCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGTACCGGAAAG-CACCAGAAGGTT 1238
|||||||||||| |||||||||||||| ||| | ||||| | |||| |||| ||||| |
Sbjct 1022 CCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGTATCA-AAAGGCACCGGAAGGGT 1080
Query 1239 CCGCCAGGAAAACA-GAAGCTCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCAT 1297
| || || |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1081 CAGCAAG-AAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTCTCACAGACTTCAT 1139
Query 1298 GTTGACAATAGCGTGATACTCG-TCGGAAAAATCTTGTTTGGCATTTCGAAAGGTCCTGA 1356
||||| |||||| | | | | | || | | |||||||| ||| ||| |||| ||
Sbjct 1140 GTTGATAATAGCATTCTGTT-GATTGGGATTCTTTTGTTTGG--TTTGGAA-GGTCATGC 1195
Query 1357 AGTGCTAAACAAAGTACGGTCTGCTGG-GCAACCGCTAGTCGATGACTGGAACTGCCTTA 1415
||| |||| ||||| ||| || |||| | ||||||| || || || ||| |||||||||
Sbjct 1196 GGTGTTAAATAAAGTCCGGCCTTCTGGAG-AACCGCTTGTTGACGATTGGGACTGCCTTA 1254
Query 1416 AAAATCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGC 1475
|| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1255 AATCTCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGTTGTCTCAGTACGGAATAAAGC 1314
Query 1476 ACATGAGGTCCTTTGCAAACATCTGCAACGCAGGGATCC-GAACTGAG-CAAATGGAGGA 1533
|||||||||| |||||||||| |||||||||||||| | || |||| |||||||||||
Sbjct 1315 ACATGAGGTCGATTGCAAACATGTGCAACGCAGGGATTCAGA--TGAGGCAAATGGAGGA 1372
Query 1534 GGCAGCT-TCACAGGCTTGTACCTCAATCCC-ACCTGGTCCTTGGAGCTCGCTTCACCGT 1591
|||||| | ||||||||| || | ||||| ||| | |||||||||||| ||| |||||
Sbjct 1373 GGCAGCAATG-CAGGCTTGTCCCACCATCCCTACCAG-TCCTTGGAGCTCTCTTGACCGT 1430
Query 1592 GGATTCAGTGC 1602
|||||||||||
Sbjct 1431 GGATTCAGTGC 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5