BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491403
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32915.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1003 0.0
> AT4G32915.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: regulation of translational fidelity; LOCATED
IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:15885520-15886980 FORWARD LENGTH=745
Length=745
Score = 1003 bits (543), Expect = 0.0
Identities = 610/641 (95%), Gaps = 10/641 (2%)
Strand=Plus/Plus
Query 1 AGCCATGGCGACCAGAGCTTTGCTTGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT 60
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 26 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT 85
Query 61 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTCCTCTTCTTCAAGTCATTATTACCA 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 86 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACC- 144
Query 121 AAGACGACAGAGTAGAAAAATCCACAGAATAGCTCCAAGTTACTCGTCTGACTCGGATTC 180
|| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 145 AA-A-GACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTC 202
Query 181 CTCCGTTCTTCAGCCGCCGGACGTGTCCCGTCTAGCTCAGACAGCTCGAATCTCTCTAAC 240
||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 203 CTCCGTTCTTCAGCCGCCGGATGTGGCCCGTCTTGCTCAGACAGCTCGAATCTCTCTAAC 262
Query 241 TCCGGAC-GAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 299
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TCCGG-CGGAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 321
Query 300 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGCG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 322 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGTG 381
Query 360 GAGATTTGCGAGAGGATGCTCCAGAAACATTTGAGAACAGGGACAGTATAAGAGCTTCCA 419
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 382 GAAATTTGCGAGAGGATGCTCCAGAAACATTTGACAACAGGGACAGTATAAGAGCTTCCA 441
Query 420 TTCCAAGCTTTGAGGACGCATATTTAAAAGTCCCTAAAATACTTAACAAAGAGTGACTTT 479
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 442 TTCCAAGCTTTGAGGACGCATATCTAAAAGTCCCTAAAATACTAAACAAAGAGTGACTTT 501
Query 480 TTCAGCTTCTTGGATTTGTTTGCCTGGAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 539
|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 502 TTCAGCTTCTTGGAATTGTTTGGCTGAAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 561
Query 540 GCATCT--ATGTTTTCTAAAATTGGTTAGGAGAAAACAAAATTGCCTCAAAAATTGTGAA 597
|||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 562 GCATCTCTATGTTTTCTAAAATTGGTTAGCAGAAAACAAAATTGCCTCAAAA-TTGTTAA 620
Query 598 GTCTCACGTAGGCTATCACTCTCTACAACATTTTGTTCACA 638
|||||||||||||||| | | ||||||||||||||||||||
Sbjct 621 GTCTCACGTAGGCTATTA-T-TCTACAACATTTTGTTCACA 659
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 663 AGTGTCTGTGATGGGCCGTTTTGATCCCGGCCT 695
|||||||||||||||||||||||||||| ||||
Sbjct 712 AGTGTCTGTGATGGGCCGTTTTGATCCCAGCCT 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5