BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491430 Length=1585 Score E Sequences producing significant alignments: (Bits) Value AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chlor... 2381 0.0 > AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | chr4:15804914-15807982 FORWARD LENGTH=1726 Length=1726 Score = 2381 bits (1289), Expect = 0.0 Identities = 1526/1632 (94%), Gaps = 49/1632 (3%) Strand=Plus/Plus Query 1 TCTTCTATTATGGAGATACGGAGCTTGATTGTTTCTTTGAACCCTAATTTCTCTTCCTTT 60 ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 59 TCTTCCATTATGGAGATACGGAGCTTGATTGTTTCTATGAACCCTAATTTATCTTCCTTT 118 Query 61 GAGCTCTCTCGCCCTG---------TCACTCGCT--C-A----C--TCCGATCGGCTAAA 102 |||||||||||||||| ||||||||| | | | |||||||| ||||| Sbjct 119 GAGCTCTCTCGCCCTGTATCTCCTCTCACTCGCTCACTAGTTCCGTTCCGATCGACTAAA 178 Query 103 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACTCCGTCCT-CTGACAC 161 |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || Sbjct 179 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACCCCG-AATAGTGAAAC 237 Query 162 TGACAAGATCTCCGTGAAACCTGTTTACGTCCCGACGCCCCCCAATCGTGAGCTCCGGAC 221 ||||||||||||||| ||||||||||||||||||||| | |||||||| || |||||||| Sbjct 238 TGACAAGATCTCCGTTAAACCTGTTTACGTCCCGACGTCTCCCAATCGCGAACTCCGGAC 297 Query 222 TCCTCACAGTGGATACCATTTCGATGGAACAGCTAGGAAGTTCTTCGAGGGATGGTATTT 281 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 298 TCCTCACAGTGGATACCATTTCGATGGAACACCTCGGAAGTTCTTCGAGGGATGGTATTT 357 Query 282 CAGGGTTTCAATTCCAGACAAGAGGGAGAGTTTTTGCTTTATGTATTCTGTGGAGAATCC 341 ||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 358 CAGGGTTTCCATCCCAGAGAAGAGGGAGAGTTTTTGTTTTATGTATTCTGTGGAGAATCC 417 Query 342 TGCATTTCGCCAGAGATTGTCACCATTGGATGTGGCTCTTTATGGACCTAGATTCACTGG 401 ||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 418 TGCATTTCGGCAGAGTTTGTCACCATTGGAAGTGGCTCTATATGGACCTAGATTCACTGG 477 Query 402 TGTCGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATAC-ACGCAAGAGT 460 ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| | Sbjct 478 TGTTGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATACGA-ACAAGACT 536 Query 461 CTCACAACTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 520 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CTCACAATTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 596 Query 521 CAGGCGCAAAGTCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGGGTGTCCG 580 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 597 CAGGCGCAAAGGCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGAGTGTCCG 656 Query 581 AAGGGTTCCAAGCTACCCCATTTTGGCATCAAGGTCACATTTTCGATGATGGCCGGACTG 640 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 657 AAGGGTTCCAAGCTACTCCATTTTGGCATCAAGGTCACATTTGCGATGATGGCCGTACTG 716 Query 641 ACTATGCGGAAACGGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCTGTTTACGGTT 700 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 717 ACTATGCGGAAACTGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCCGTTTACGGTT 776 Query 701 GGGGTGATGTTGGGGCCAAACAGAAGTCTACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 760 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 777 GGGGTGATGTTGGGGCCAAACAGAAGTCAACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 836 Query 761 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTGTCCACAGGGTGGATAGAATGGG 820 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 837 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTTTCCACAGGGTGGATAGAATGGG 896 Query 821 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 956 Query 881 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAAGTGGAGAAG 940 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 957 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAACTGGAGAAG 1016 Query 941 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAGTTGCCTGGATTGACTGAGACCTATGAAA 1000 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1017 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAATTGCCTGGATTGACTGAGACCTATGAAA 1076 Query 1001 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAATTGTACGAGTTTGTTCCGTGGAATG 1060 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1077 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAAATGTACGAGTTTGTTCCTTGGAATG 1136 Query 1061 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAAAATGAGA 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 1137 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAGAACGAAA 1196 Query 1121 CCCATATGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1180 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 ACCATGTGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1256 Query 1181 CCACAGAAGTTGGGCTAGCAACGGCTTGCAGAGATAGTTGTTACGGTGAGTTGAAGTTGC 1240 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1257 CCACAGAAGTTGGGCTAGCTACGGCTTGCAGAGATAGTTGTTACGGTGAATTGAAGTTGC 1316 Query 1241 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1376 Query 1301 CAATGGCAGCGGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACAA 1360 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1377 CAATGGCAGCAGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACGA 1436 Query 1361 GCAACACCCCCAAGCTACTCAAACAGGCTCTTCAGGTCCCATTGGATCTTGGAAGCGCCT 1420 ||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1437 GCAACACGCCCGAGCTACTAAAACAGGCTCTTCAGGTCCCATTGGATCTTGAAAGCGCCT 1496 Query 1421 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTTTGTAACATTGATGAGTGTTTTGTTTGT 1480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1497 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTCTGTAACATTGATGAGTGTTTTGTTTGT 1556 Query 1481 TGATAGAGA---A-GT--T-A-TG-----T----CAT-T----GCTAGCTTCACTA--AT 1516 ||||||||| | || | | || | ||| | ||||||||||||| || Sbjct 1557 TGATAGAGACCCATGTGATGAATGAAGCCTTAGTCATGTCATTGCTAGCTTCACTATTAT 1616 Query 1517 CT--GTATGATTT-AGTTCGTTCGGTCCTTGTGGTAAATTATACGGGCCAGTGTAAAGTC 1573 | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1617 GTATGTATGATTTTAGTTCGTTCGGTCCTTGTGGTAAATGATACGGGCCAGTGTAAAGTC 1676 Query 1574 TAGTTCAATAAA 1585 |||||||||||| Sbjct 1677 TAGTTCAATAAA 1688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78262649655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5