BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491493
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 732 0.0
> AT4G32340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15612584-15614305 REVERSE LENGTH=960
Length=960
Score = 732 bits (396), Expect = 0.0
Identities = 467/501 (93%), Gaps = 6/501 (1%)
Strand=Plus/Plus
Query 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTCCCTCCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTTCCTCCAC 60
Query 61 TGAAA-ATTTCCCCACAAGAACTAACAATATGATAATGAGAAGCGCGTCATCACTGGACC 119
||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 61 TGAAATATT-CCCCACAAGAACTAACAAT--GATAATGAGAAGCGCGTCTTCACTGGACC 117
Query 120 TTAACCTACGCGCCGCCCAGAAACCGTCGGCTCCACGTGTGGTAACGACGGCTCGAACCG 179
|||||||||||||||||||||||||||| | |||| | |||||||| |||||||||||||
Sbjct 118 TTAACCTACGCGCCGCCCAGAAACCGTCTGTTCCAAGGGTGGTAACCACGGCTCGAACCG 177
Query 180 TCTCTGCTTCTCCTCCTCGTGTTGCTAAATCGATTACGAGAGCTTCTTCAGATGGAAATC 239
|||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 178 TCTCTGCTGCTACTCCTCGTGTTGCTAAACCGATTACAAGAGCTTCTTCAGATGGAAACC 237
Query 240 TTTACAAGATTCAGTCGTCGGAGAGCAGAACGAAAACGATCAGCGTTTACCACGAAGAAA 299
| ||||||||||||||| ||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 238 TCTACAAGATTCAGTCGCCGGAGAGCATAACGAAAACCATCAGCGTATATCACGAAGAAA 297
Query 300 CTGCGTCGTAT-AGGGTTTTGGAAGGATCTTGGCTCACCCATGGAGGTTCCAACGGTGGA 358
| ||||| | | |||||||||||||||||| | ||| |||| ||||||||||||||||||
Sbjct 298 CGGCGTCTT-TGAGGGTTTTGGAAGGATCTCGACTCCCCCAAGGAGGTTCCAACGGTGGA 356
Query 359 TTTGGTGGTAGAGGCGGAGATAGTGCCGGAGGTGGCGGTGGAGGTGGAGGTGGGAGCGTA 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTTGGTGGTAGAGGCGGAGATGGTGCCGGAGGTGGCGGTGGAGGTGGAGGTGGGAGCGTA 416
Query 419 GATGGTTATTATGAAGAGATGATCCAACGTTATCCCGGTGACACTCTTCTTCTCTCTAAC 478
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 417 GATGGTTATTACGAAGAGATGATCCAACGTTATCCCGGAGACACTCTCCTTCTCTCTAAC 476
Query 479 TACGCTCGTTTCCTCAAAGAG 499
|||||||||||||||||||||
Sbjct 477 TACGCTCGTTTCCTCAAAGAG 497
Score = 566 bits (306), Expect = 2e-160
Identities = 380/414 (92%), Gaps = 12/414 (3%)
Strand=Plus/Plus
Query 497 GAGAGAGCAATGTTGTCTGAGAATGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 556
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGAGAGCGATGTTGTCTGAGAGTGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 593
Query 557 TTGATATGGAAAAATCATGGAGATGGTGTTCGTGCTCACTCTTACTTTGATCAAGCTGTT 616
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 594 TTGATATGGAAAAATCATGGAGACGGTGTTCGTGCTCAGTCTTACTATGATCAAGCTGTT 653
Query 617 CAATCTTCTCCTGATGACTGTCATGTTCTTGCGTCTTATGCTCGGTTTCTATGGGATGCT 676
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 654 CAATCTTCTCCTGATGACTGTAATGTTCTTGCGTCGTATGCTCGGTTTCTATGGGATGCT 713
Query 677 GAAGAAGAAGAGGAAGAGGAAGAAAGTAAACATG--GAA-ACGGTCTCTCTTTCTCTACC 733
|||||||||| |||||||||||| ||||||||| || | ||| ||||| |||||||
Sbjct 714 GAAGAAGAAGTGGAAGAGGAAGAGAGTAAACATCATGAGGATGGTTTCTCTGACTCTACC 773
Query 734 TATAACCCATC---ATC--T-GTGTCTTGACTATTTGTGCTGATGTTAAACCGGTGTAAT 787
||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 774 TATAACCCATCTGTATCAGTTGTGTCTTGACTCTTTGTGCTGATGTTAAACCGGTGTAAT 833
Query 788 ACAATAAAAACTCAAAAGTCCGGTTTAGTCAGGAAAATATCTTCTGCATA--TTGAAGCA 845
||||| |||||||||| |||||||||| |||||||||||||||||||| | |||||| |
Sbjct 834 ACAATGAAAACTCAAAGGTCCGGTTTAATCAGGAAAATATCTTCTGCACACATTGAAGTA 893
Query 846 GATCGATGCTAATGTGTATCAAAAG-TCCAAAGCCGCATTATTGTTGCAAAATG 898
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 894 GATTGATGCTAATGTGTATCAAAAGGTCCAAAGCCGCATTATTGTTGCAAAATG 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5