BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491499 Length=958 Score E Sequences producing significant alignments: (Bits) Value AT4G32295.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1399 0.0 > AT4G32295.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15592904-15594273 FORWARD LENGTH=966 Length=966 Score = 1399 bits (757), Expect = 0.0 Identities = 897/961 (93%), Gaps = 24/961 (2%) Strand=Plus/Plus Query 1 TCTCTCTCTGATAGAAAAGGAAGTGGTGGAAGATATGCCGAGGCCAGGGCCAAGACCGTA 60 ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 25 TCTCTCTCTCATAGAAAAGGAAGTGGTGGAAG--ATGCCGAGGCCAGGGCCAAGACCGTA 82 Query 61 CGACTGTATCAGAAGAGCTTGGCATAGTGACATACACCAACCCATGAGGGGTTTGCTCAT 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 83 CGACTGTATCAGAAGAGCTTGGCATAGTGACAGACACCAACCCATGAGGGGTTTGCTCAT 142 Query 121 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAAGAAGAACACAGA 180 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 143 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAGGAAAAACACAGA 202 Query 181 ATGGCAAGAGAAGCTCCCTGTTGTTGTTTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 240 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 203 ATGGCAAGAGAAGCTCCCTGTTGTTGTCTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 262 Query 241 TAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 CAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 322 Query 301 CAACACCATCATTCGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 360 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 CAACACAATCATACGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 382 Query 361 AGAAGCTGCTTTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 420 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 383 TGAAGCTGCATTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 442 Query 421 AAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATTTTGTCCCAAGT 480 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 443 TAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATGTTGTCCCAAGT 502 Query 481 ATTCATGAAACCTAACAACAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAAGTG 540 |||||||||||| || | ||||||||||||||||||||||||||||||||||||||| || Sbjct 503 ATTCATGAAACC-AA-A-CAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAATTG 559 Query 541 CCCTGTCTCCAAGTACTCGGCCTACCCTTTATGCTATTCATTCCGGCCAATCTCTGACTC 600 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 560 CCCTGTCTCCAAGTACTCTGCCTACCCTTTATGCTATTCATTCCGGCCAATCAGTGACTC 619 Query 601 GTGCAAGTCCAAAAACAGTAGACCTGCAAGTCTCTTTGATGCTACGAATGGCATTACCTT 660 ||| |||||||| ||||||||||| || |||||| |||| || || |||||||||||||| Sbjct 620 GTGTAAGTCCAAGAACAGTAGACCGGCGAGTCTCATTGACGCAACAAATGGCATTACCTT 679 Query 661 TGATGGAG-GTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGATCTCCACCTCCTA 719 || ||| | |||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 680 TGGTGG-GTGTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGA-C-C----TCCTA 732 Query 720 CTCATAAACGAAGTAAGATGAGcaacaacaacaacaacaGCTGAAAAAGAG-GACAAGAT 778 |||| |||||||||||||| |||| |||||| |||||| |||||| ||| | |||||| Sbjct 733 CTCAAAAACGAAGTAAGATAAGCAGCAACAATAACAAC---TGAAAAGGAGAG-CAAGAT 788 Query 779 TGAGTTTTGATTAGTGAGTCTTGTGTTAGAAGAATGTGTGCTTCAGTTAGGTCTTTTAGT 838 || ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 789 TGGGTTTTGATTAGCAAGTCTTGTGTTAGAAGAATGTGTGCTT-AGTTAGGCCTTTTAGT 847 Query 839 ATCCTCTCTAG-CCTCTAGGGTTTAGGTGTTTGTGAACATGTAAATAGATAGACGAAGTA 897 |||||||||| || ||||| ||||||| || ||||||||||||||||| |||||||||| Sbjct 848 CTCCTCTCTAGACC-CTAGG-TTTAGGT-TT-GTGAACATGTAAATAGAGAGACGAAGTA 903 Query 898 GCAAAACAGGAGATGAAGTCGTTTTCTTCTTCCTGCATCAGTCTCGAATCATCGGACTTC 957 ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| Sbjct 904 ACAAAACAGGAGATGAAGTCGTTTTCTTCTACCTGCATCAATCTCGAATCATCAGACTTC 963 Query 958 A 958 | Sbjct 964 A 964 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46868459151 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5