BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491508 Length=933 Score E Sequences producing significant alignments: (Bits) Value AT4G32260.1 | Symbols: | ATPase, F0 complex, subunit B/B', bac... 1417 0.0 > AT4G32260.1 | Symbols: | ATPase, F0 complex, subunit B/B', bacterial/chloroplast | chr4:15573636-15574737 REVERSE LENGTH=1034 Length=1034 Score = 1417 bits (767), Expect = 0.0 Identities = 883/936 (94%), Gaps = 19/936 (2%) Strand=Plus/Plus Query 1 AATCTCACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AATCTGACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60 Query 61 AGCAAAtctcttctctctctctctctTCGTCTCCAAAGAGATTACAGAGATCAGTTTTTG 120 ||||||||||||||||||| | | |||||||||||||||||| | ||| ||||| Sbjct 61 AGCAAATCTCTTCTCTCTC-C-C-ATTCGTCTCCAAAGAGATT------A-CAG-TTTTG 109 Query 121 AACATTTCTCATCTCTCGAAGCTCTTCTCTCAGTGTGTGTAGCCATGGCTGCTAATTCGA 180 | |||||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 110 AGCATTTCTCATCTCTCGAAGCTCTTCTCT--GTGTGTGTGGCGATGGCTGCTAATTCGA 167 Query 181 TTATGGCTTCTTCCAAACCACTAATCTCCCTCTCCTCCAACCAACAACCAAGCCGAGTCC 240 | |||||||| |||||||| ||||||||||| || |||||||||||||||| |||||||| Sbjct 168 TAATGGCTTCCTCCAAACCCCTAATCTCCCTGTCATCCAACCAACAACCAAACCGAGTCC 227 Query 241 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCATCACTTCCTCCTCCGATC 300 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 228 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCCTCACTTCCTCCACCGATC 287 Query 301 TCCGTAGCAAAGCTCTATCACTCTCTTCCGCCACCGCCAAATCTTTAGCTCTAATCGCCG 360 ||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| Sbjct 288 TCCGTAGCAAAGCACTATCACTCTCCTCCGCCACCGCCAAATCCTTAGCTTTAATCGCCG 347 Query 361 CCTTCGCTCCTCCGTCAATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 420 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 CTTTCGCTCCTCCGTCGATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 407 Query 421 TAACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCGCTCGACAAGGTCT 480 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 408 TCACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCTCTCGACAAGGTCT 467 Query 481 ATTACTCTCCGCTTGGGAATTTCATGGACCAGAGAGACGCTTCCATCAAAGAGAAGCTCG 540 |||||||||||||||| || |||||||| || |||||||||||||||||||||||||||| Sbjct 468 ATTACTCTCCGCTTGGTAACTTCATGGATCAAAGAGACGCTTCCATCAAAGAGAAGCTCG 527 Query 541 CGAGTGTTAAAGACACTTCGGCTGAGGTAAAGGAGCTCGATGAGAAAGCCGCCGCCGTGA 600 |||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct 528 CGAGTGTTAAGGACACTTCGACTGAAGTAAAGGAGCTCGATGAGCAAGCCGCCGCCGTGA 587 Query 601 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 647 Query 661 TTGAGGTTGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAGGAGCTAAAAGAAG 720 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 648 TTGAAGTCGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAAGAGCTAAAAGAAG 707 Query 721 CTTTGGCGAGCTTGGAGAAG-CAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 779 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 708 CTTTGGCGAGCTTGGAG-AGTCAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 766 Query 780 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 826 Query 840 ACTTTGTAATtctctgtctctctctctGTCAAAACTTATTTACAAGAAATTACTGTAAAt 899 ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 827 ACTGTGTAATTCTCTGTCTCTCTATCT--CAAAACTTATTTACAAGAAATTACTGTAAAT 884 Query 900 ctcttctt-t-cttcttctctgtttcttGGATTGTT 933 |||||||| | ||||||||||||||||||||||||| Sbjct 885 CTCTTCTTCTTCTTCTTCTCTGTTTCTTGGATTGTT 920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45612605476 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5