BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491509
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32250.1 | Symbols: | Protein kinase superfamily protein | ... 3053 0.0
> AT4G32250.1 | Symbols: | Protein kinase superfamily protein
| chr4:15570044-15572607 REVERSE LENGTH=2156
Length=2156
Score = 3053 bits (1653), Expect = 0.0
Identities = 1847/1941 (95%), Gaps = 11/1941 (1%)
Strand=Plus/Plus
Query 217 ACAAAGATAAATGGCTTCAAAGATTATTGCTGGCAAGCCGGATGATTCCGAGTATGAAAT 276
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 70 ACAGAGATAAATGGCTTCAAAGATTATTGCTGGCAAGCCGGATGATACCGAGTATGAAAT 129
Query 277 CATTGAAGGTGAGTCTGAGAGCGCTTTAGCAGCGGGGACAAGCCCTTGGATGAATTCATC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CATTGAAGGTGAGTCTGAGAGCGCTTTAGCAGCGGGGACAAGCCCTTGGATGAATTCATC 189
Query 337 AACGTTGAAGCTTCGACATCGAATTGGAAGAGGTCCCTTCGGTGATGTTTGGCTGGCTAC 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AACGTTGAAGCTTCGACATCGAATTGGAAGAGGTCCCTTCGGTGATGTTTGGCTGGCTAC 249
Query 397 TCATCATCAGTCAACTGAGGACTATGATGAGCATCATGAAGTGGCAATCAAAATGCTTCA 456
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 250 TCATCATCAGTCAACTGAGGACTATGATGAGCATCATGAAGTGGCCATCAAAATGCTTTA 309
Query 457 TCCTATCAAGGAGGATCAAAGAAGGGTTGTGGTAGATAAGTTTGAAGATCTGTTCTCCAA 516
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 310 TCCCATCAAGGAAGATCAAAGAAGGGTTGTGGTAGATAAGTTTGAAGATCTCTTCTCTAA 369
Query 517 GTGTCAAGGAGTAGAGAATATCTGTCTGCTCCGAGGAGTCTCTAGTATCAGTGGAAAGAT 576
||||||||| |||||||| ||||||||||| | |||||||||||||||| |||||||||
Sbjct 370 ATGTCAAGGACTAGAGAATGTCTGTCTGCTCAGGGGAGTCTCTAGTATCAATGGAAAGAT 429
Query 577 ATGCATCATCATGAAATTCTACGAGGGCTCTGTTGGTGATAAGATGGCTCGGCTTAAAGG 636
||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 430 ATGTGTCGTCATGAAATTCTACGAGGGCTCTCTTGGTGACAAGATGGCTCGGCTTAAAGG 489
Query 637 AGGAAAGCTTTCACTGCCTGATGTATTGAGATACGGGGTTGATCTGGCTACAGGGATCCT 696
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 490 AGGAAAGCTTTCACTGCCAGATGTTTTGAGATACGGGGTTGATCTGGCTACAGGGATCCT 549
Query 697 GGAGTTGCACTCAAAAGGGTTTCTGATTCTCAATCTTAAGCCCTCTAACTTTCTTCTAAG 756
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 550 GGAGTTGCACTCAAAAGGGTTTCTCATTCTCAATCTCAAGCCCTCTAACTTTCTTCTCAG 609
Query 757 TGATAACGACAAGGCCGTCCTCGGGGATGTTGGGATCCCTTATCTCCTTCTCAGTATCCC 816
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 610 TGATAACGACAAGGCCATCCTCGGGGATGTTGGGATCCCTTATCTCCTTCTTAGTATCCC 669
Query 817 TTTGCCAAGTTCTGATATGACAGTGAGACTTGGAACACCAAGCTATATGGCTCCAGAACA 876
||| ||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||
Sbjct 670 TTTACCAAGTTCTGATATGACAGAGAGACTTGGAACTCCAAACTATATGGCACCAGAACA 729
Query 877 GTGGCAACCGGAAGTAAGAGGTCCCATGTCCTTTGAGACTGATTCTTGGGGATTTGGTTG 936
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTGGCAACCGGATGTCAGAGGTCCCATGTCCTTTGAGACTGATTCTTGGGGATTTGGTTG 789
Query 937 CAGCATTGTGGAAATGCTGACTGGTGTACAACCTTGGTCGGGGAGATCCGCCGATGAAAT 996
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 790 CAGCATTGTTGAAATGCTGACTGGTGTACAACCTTGGTCTGGGAGATCTGCCGATGAAAT 849
Query 997 ATATGATTTGGTGGTGAGAAAGCAAGAAAAGCTTAGTATCCCCAATACCATACCGCCTCC 1056
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 850 ATATGATTTGGTGGTGAGAAAGCAAGAAAAGCTTAGTATCCCCAGTAGCATACCGCCTCC 909
Query 1057 TCTTGATAACCTACTTCGGGGTTGCTTTATGTATGATCTTCGAAGCCGACCTTCGATGAC 1116
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TCTCGAGAACCTACTTCGGGGTTGCTTTATGTATGATCTTCGAAGCCGACCTTCGATGAC 969
Query 1117 TGACATCTTACTCGTCTTAAAGAGCTTGCAGAGCTCGGAGGAGGAACAGGTCTGGAGAGG 1176
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 970 TGACATCTTACTCGTCTTAAAGAGCTTGCAGAACTCGGAGGAGGAACAGGTCAGGAGAGG 1029
Query 1177 CATTGATAGTAGAGAAATCATGAAGAGCTCGGGTACTCTTGGTTATACAGAATGGTTTCT 1236
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1030 CATTGATAGTAGAGAAATCAGGAAGAGCTCGGCTACTCTTGGTTATACAGAATGGTTTCT 1089
Query 1237 TTCAAAGGATCATCTGCAAGTGGGCGACACAGTGCGTTCAAGAAAGCCTGCCAATTCGTG 1296
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1090 TTCAAAGGATCATCTGCAAGTGCGCGACACCGTGCGTTCAAGAAAGCCTGCCAATTCGTG 1149
Query 1297 TAAGCATGAGAACATGGATGTGCCAGAAGGAATTGTGGTTGGTTTAGAACGTGACACCAC 1356
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1150 TAAGCATGAGAACATGGATGTGCCAGAAGGAATGGTGGTTGGTTTAGAACGTGACTCCAC 1209
Query 1357 AGACCCAGATGGATTTGTGCTAGTTAAAGTCCATGGTGTACATGATCCGTTAAGGGTTCA 1416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1210 AGACCCAGATGGATTTGTGCTAGTTAAAGTCCATGGTGTACATGATCCATTAAGGGTTCA 1269
Query 1417 CGTGTCTGTTCTTGAACGGGTAACTAACGGCTTAGCTTCTGGAGATTGGGTGCGTCTGAA 1476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CGTATCTGTTCTTGAACGGGTAACTAACGGCTTAGCTTCTGGAGATTGGGTGCGTCTGAA 1329
Query 1477 GGTCAGGAAAGACAAGAGGCACTCTCCGGTTGGTGTTCTCCATTCAATTGACCGTGAGGG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GGTCAGGAAAGACAAGAGGCACTCTCCGGTTGGTGTTCTCCATTCAATTGACCGTGAGGG 1389
Query 1537 AAATGTAGCTGTTGGGTTTATTGGGTTGCCAACTCTCTGGAAAGGGACATCATCGCAGCT 1596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 AAATGTAGCTGTTGGATTTATTGGGTTGCCAACTCTCTGGAAAGGGACATCATCGCAGCT 1449
Query 1597 TCAGATGGCTAAAGCATACAGTGTGGGTCAATTTGTGAAACTGAAAGCCAATGTTGTCAT 1656
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1450 TCAGATGGCTAAAGTATACAGTGTGGGTCAATTTGTGAAACTCAAAGCCAATGTTGTCAT 1509
Query 1657 CCCGAGATTCAAATGGATGCGTAAAAGTAGAGGTATTTGGGCAACTGGCAGGATCTCTCA 1716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1510 CCCGAGATTCAAATGGATGCGTAAAGGTAGAGGTATTTGGGCAACTGGCAGGATCTCTCA 1569
Query 1717 GGTTCTACCAAATGGTTGCCTCGAGGTGGACTTCCCTGGAGTGTTACCTTTTGGAGAGGA 1776
|||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 1570 GGTTCTACCAAACGGTTGCCTTGAAGTGGACTTCCCTGGAATGTTACCTTTTGGAGAGGA 1629
Query 1777 ACATGGAAGTTGTCTTGCAGATCCGGCTGAAGTAGAGATTGTGAATTTCAATACATGTCA 1836
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 ACATGGAAGCTATCTTGCAGATCCGGCTGAAGTAGAGATTGTGAATTTCAATACATGTCA 1689
Query 1837 AGGAGTTGTGAAAAAATATCAACATCTGGAGGATATTCATTGGGCTGTGAGACCTTTGCT 1896
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1690 AGGAGCTGTGGAAAAATATCAACATCTGGAGGATTTTCATTGGGCTGTGAGACCTTTGCT 1749
Query 1897 TATTGCTATGGGTCTATTGACAGCAATGAAGTTAGGGTTCTTTGTCGGGAAGAAAATAGG 1956
|||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||
Sbjct 1750 TATTGCTATGGGTCTATTGACAGCGATGAAGTTAGGGATCTGTGTCAGGAAGAAAATAGG 1809
Query 1957 AAGGTCAAAGGATGGAAAACAGCGCGATGGCTCGAGTGGACAAGATGACTGTAAGATTCC 2016
||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1810 AAGGTCAAAGGATGGGAAACAACGCGATGGCTCGACTGGACAAGGTGACTGTAAGATTCC 1869
Query 2017 GGAGGGTAAGGGCTCTGGCAAATCTAAATGGCTTGTGTTCAGTGTTTAGGGCTGTT-TGT 2075
||| ||||||||||||| |||||||||||||||||||||| | |||||| ||| | ||
Sbjct 1870 GGATGGTAAGGGCTCTGACAAATCTAAATGGCTTGTGTTC--T-TTTAGGTCTGCTATGA 1926
Query 2076 GTCA-A-ACCTGGTCTGGTCCATATATTATTCTGTTCTAGTCATG-----GTTTCATGTA 2128
| || | |||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1927 GACACAGACCTTGTCTGGTCCATATATTATACTGTTCTAGTCATAATAACGTTTCATGTA 1986
Query 2129 CATAATAACATTTTTATTTTT 2149
|||||| || ||||| |||||
Sbjct 1987 CATAATGACGTTTTTCTTTTT 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106575757035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5