BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491533 Length=1362 Score E Sequences producing significant alignments: (Bits) Value AT4G32020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1670 0.0 > AT4G32020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15487944-15489450 FORWARD LENGTH=1507 Length=1507 Score = 1670 bits (904), Expect = 0.0 Identities = 1210/1345 (90%), Gaps = 71/1345 (5%) Strand=Plus/Plus Query 44 ACCAAATCTGCCTTTCTCAATTAGCCATGGGCGTCGCCGTTCTAAATCCTCAAGATTGCT 103 ||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| Sbjct 107 ACCAAATCTGCCTTTCTCAATTAGCTATGGGCGTCGCTGTTCTAAATCCCCAGGATTGCT 166 Query 104 TGAAAGATCCTTTCTCTCACATGAAGCACCATCGCAATCCCAGCGCATGTCCCAACAGGC 163 |||||||||| |||||||||||||| || ||||| ||||| ||||||||||||||||||| Sbjct 167 TGAAAGATCCATTCTCTCACATGAAACAACATCGTAATCCTAGCGCATGTCCCAACAGGC 226 Query 164 AGAAGAAGCCGGTTTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAATCAATCCGCCA 223 |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 227 AGAAGAAGACGGTCTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAGTCAATCCTCCA 286 Query 224 GATCTTctcctcctcctcctcctgtagcgccgccgcttcctcctcctcGTGCGGCCGTCT 283 |||| | | || | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 287 GATC-T-T-CT--T-CTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCTGTCT 340 Query 284 CTTCTTTCATTCCAAAAGGAACCGTTAAGAAGAGTCCTAGCAACACCGTAGTCGTTAGCC 343 || ||||| ||||||| |||||| |||||||||||| |||||| ||||| | |||||||| Sbjct 341 CTGCTTTCGTTCCAAAGGGAACCCTTAAGAAGAGTCTTAGCAATACCGTTGCCGTTAGCC 400 Query 344 AGGTGAGAATCCTGAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTTG 403 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 401 AGGTGAGAATCCTTAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTGG 460 Query 404 AAAACTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGAGTC 463 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 461 AAATGTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGGGTC 520 Query 464 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 580 Query 524 TGACCTCGCCGCCTCCGAGCGATGTCCCGCTTCCAGCCTTT-TTCACGAAGAAGGCAACC 582 |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| Sbjct 581 TGACCTCGCCGCCTCCTAGCGATGTCCCGCTTCCAGC-TTTCTTCACGAAGAAGGCAACA 639 Query 583 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCGCCGATCATT 642 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 640 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCACCGATCATT 699 Query 643 TTAGATTTTC-AAAA-TCTCCGATGATCCAACTTGTTACTCAA-GTGTTACAATTCCAAA 699 || |||||| |||| ||||||||||||||| | ||||| ||| |||||||| |||| | Sbjct 700 TTTGATTTTTTAAAAATCTCCGATGATCCAAATGGTTAC-CAAAGTGTTACATTTCCGTA 758 Query 700 --ACCG---GA--GAT-C----T-A---C---A-A---G-AA-AAA-TATAATCTCCAGA 733 |||| | ||| | | | | | | | || ||| ||||||||||||| Sbjct 759 TTACCGATCGTCCGATTCCGCCTGAAAACCGGAGATCTGCAACAAAATATAATCTCCAGA 818 Query 734 CGATGA--A-TCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 790 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 CGATGATGAATCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 878 Query 791 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 938 Query 851 TTAGGGTTTAGTGTTTGTGTAGGAGTATATGTGCATAGAGACTTTT-ACTAGTTTTCGTT 909 |||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||| Sbjct 939 TTAGGGTTTAGTGTTTGTGTAGGAGTATTTGTGTATAGA--CTTTTTACTAGTTTTCGTA 996 Query 910 TCTTTCTCTGTATCTTTGGGTTTTTAATT-CTGCTTAATCGTCAGGTTCTCTGGGTAAAT 968 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 997 TCTTTCTCTGTATCTTCGGGTTTTTAATTTCTGCTTAATCGTCAGGTTCTCTGGGTAAAT 1056 Query 969 CTTAGTTTCGTACTTTGTGTCTTTGTCATTTCGTTTGTGTCTGA-GTGAATTAGTAGGTC 1027 | ||| || | |||| |||| ||||||| ||||||| | ||| |||||| |||| Sbjct 1057 CATAGGTTGG--CTTT-TGTC------ATTTCGTCTGTGTCTTAAGTGGATTAGTTGGTC 1107 Query 1028 GTAAGACAAGTTATAGAGATGTGTCTACTGGTAA-GATGACGTTTAGGTTTCGATGTAAT 1086 |||||||||||||||||||||||| ||| ||||| ||||| | |||||||| |||||||| Sbjct 1108 GTAAGACAAGTTATAGAGATGTGTTTACGGGTAAAGATGAAGCTTAGGTTTTGATGTAAT 1167 Query 1087 CTTCTTCGGTATTGCGATTCTCTGTATTTCTTCTATCCTT--A----A----GTTTAAGT 1136 |||||||||| || | ||||||||||||||| ||||| || | | |||||||| Sbjct 1168 CTTCTTCGGTTTTTCAATTCTCTGTATTTCT-CTATCTTTTTAGTTTATCAAGTTTAAGT 1226 Query 1137 TTTATTTGGGGTTTCTTCTTCATTTGGGTCTCTTTCTGTTGTTCCTTAAGGTTCTTCGTT 1196 ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| Sbjct 1227 TTTATTTGGGGTTTCTTCTTCGTTTGGGTATCTTTCTGTTTTTCCTTAAGGTTCTTCGTT 1286 Query 1197 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTATTTACTGGTTAGATGAAG 1256 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1287 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTAATTACTGGTTAGATGAAT 1346 Query 1257 CTTAAGGTTTCCATGTAATCC-TT-GTACTACAAATTCTCTGTACTTCTCTATCTTTAAT 1314 |||||||||||||||||| || || ||||||||| ||||||||||||||||||||||||| Sbjct 1347 CTTAAGGTTTCCATGTAA-CCGTTTGTACTACAA-TTCTCTGTACTTCTCTATCTTTAAT 1404 Query 1315 ACTATCGAATTTAAGTTTTATCTTT 1339 | ||||||||||||||||||||||| Sbjct 1405 ATTATCGAATTTAAGTTTTATCTTT 1429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67067928120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5