BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491537
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31990.3 | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotran... 2320 0.0
> AT4G31990.3 | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotransferase
5 | chr4:15470761-15473853 REVERSE LENGTH=1712
Length=1712
Score = 2320 bits (1256), Expect = 0.0
Identities = 1450/1541 (94%), Gaps = 24/1541 (2%)
Strand=Plus/Plus
Query 1 AATGACTAAT-TTACCCCTATCAAGACAAGCC-------T-AGAACAACTTCATAGACAT 51
||||||| || ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 29 AATGACT-ATCTTACCCCTATCAAGACAAGCCTGAGAAGTGAGAACAACTTCGTAGACAT 87
Query 52 CGTCGTGTCTCTCTCTCGGTGAATCCTTG---ATC-TTTTCTTCAATCTCTCTCGACCTA 107
|||||||||||||||||| |||||||||| ||| |||||||||| |||||||| ||
Sbjct 88 CGTCGTGTCTCTCTCTCGTTGAATCCTTGTTAATCTTTTTCTTCAA--TCTCTCGATCTG 145
Query 108 ATCGTTTTCGAAACCGCACGATTCTAACCAAGTCCAG-TGA-TTTGAGATCTGTGCAGCT 165
|||||| |||||||||| ||||||||||||||||||| | | |||| | || | |||
Sbjct 146 ATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAGTTAATTTTGTGCTCCAT--AGC- 202
Query 166 TAAT-AATGGCTTCGTCAATGTTATCTCTCGGTTCAACACCTCTATTACCGCGCGAGATT 224
| | |||||||| | |||||||||||||||||| || |||| |||||||||||||||
Sbjct 203 GATTCCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATT 262
Query 225 AACAAGGATAAGCTAAAGCTTGGAACTTCTAATTCGAAGCCGTTCCTAAAAGCAAAGTCT 284
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 263 AACAAGGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGTCT 322
Query 285 TTTAGCAGGGTGACTATGACGGTTGCAGTCAAGCCTTCTCGTTTCGAGGGTATAACTATG 344
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 323 TTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATG 382
Query 345 GCTCCACCAGACCCTATTCTTGGAGTCAGCGAAGCATTCAAAGCTGACAATAACGAGATG 404
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 383 GCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCATTCAAAGCTGACACTAACGGGATG 442
Query 405 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 502
Query 465 GTTGTTAAAAAGGCAGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 524
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTTGTTAAAAAGGCGGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 562
Query 525 ATTGAGGGTTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 584
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 ATTGAGGGGTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 622
Query 585 CCTGTTATCAAGGAACAAAGAGTGGCAACAATTCAAGGTCTTTCGGGAACAGGTTCACTG 644
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 623 CCTGTTATTAAGGAACAAAGAGTAGCAACAATTCAGGGTCTTTCGGGAACAGGTTCACTG 682
Query 645 CGATTAGCTGCAGCTCTTATAGAGCGTTATTTTCCTGGAGCAAAAGTTGTGATATCATCA 704
|||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 683 CGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCA 742
Query 705 CCAACCTGGGGTAATCACAAGAATATTTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 764
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 743 CCAACCTGGGGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 802
Query 765 CGCTACTATGATCCCAAGACAATTGGTTTGGACTTTGAGGGAATGATAGCAGATATAAAG 824
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 803 CGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG 862
Query 825 GAAGCTCCAGAAGGATCTTTCATTTTGCTTCATGGATGTGCTCACAACCCAACTGGAATT 884
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 863 GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCAACTGGAATT 922
Query 885 GACCCAACCCCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATC 944
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 923 GACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATC 982
Query 945 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1042
Query 1005 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1102
Query 1065 AATTTAGGTCTT-TATGCAGAAAGAATTGGGGCAATCAATGTTGTGTGCTCATCAGCTGA 1123
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1103 AATTTAGGT-TTGTATGCAGAAAGAATTGGGGCAATCAATGTCGTGTGCTCCTCAGCTGA 1161
Query 1124 TGCTGCTACAAGGGTCAAGAGCCAATTGAAAAGGATTGCTCGGCCTATGTACTCGAACCC 1183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1162 TGCTGCTACAAGGGTCAAGAGCCAGTTGAAAAGGATTGCTCGGCCTATGTACTCGAATCC 1221
Query 1184 ACCAGTTCATGGGGCGAGAATTGTGGCAAATGTTGTTGGTGATGCAACCATGTTCAGTGA 1243
||||||||||||||||||||| ||||| ||||| || ||||||| ||| |||||||||||
Sbjct 1222 ACCAGTTCATGGGGCGAGAATCGTGGCCAATGTAGTGGGTGATGTAACTATGTTCAGTGA 1281
Query 1244 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTGAGACAAGAGTTGTA 1303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1282 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTTAGACAAGAGCTGTA 1341
Query 1304 TGATAGCCTTGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1401
Query 1364 TGGCATGTTCTCTTTCACCGGGCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1423
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1461
Query 1424 GCATGTGTACATGACTAAAGACGGGAGGATATCACTGGCTGGATTGTCTCTGGCGAAATG 1483
||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 1462 GCATGTGTATATGACTAAAGACGGGAGGATATCATTGGCCGGATTATCTCTGGCCAAATG 1521
Query 1484 TGAGTACCTTGCTGATGCGATCATCGACTCATACCATAACG 1524
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1522 CGAGTATCTTGCTGATGCGATCATCGACTCATACCATAACG 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5