BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491549
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31875.1 | Symbols: | unknown protein; Has 30201 Blast hits... 501 3e-141
> AT4G31875.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15411701-15412289
REVERSE LENGTH=589
Length=589
Score = 501 bits (271), Expect = 3e-141
Identities = 351/387 (91%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 164 AATTCCTTCGTCTGGCCCGTATACTCAGATTTT-GTCGACCTCCGAGAAGATCTTTTTCT 222
|||||||||| ||||||||||||||||| |||| |||||| || ||||||||| ||||
Sbjct 207 AATTCCTTCGACTGGCCCGTATACTCAG-TTTTCCTCGACC-CC--GAAGATCTTCTTCT 262
Query 223 CGGAGAAGTTTGTGAAGAGCCACGGACATCTCTTAATAAGACTCGAAAGATACGAGATCC 282
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 263 CGGAGAAGTTTGTGAAGAGCCACGGACACCTCTTATTAAGACTCGAAAGATACGAGATCC 322
Query 283 TCCTCCTCGAGTATCTCGTCGATCCTCAGAAGTATCTAGACCGATTTATCTCCGCCATAG 342
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 323 TCCTCCTCGAGTATCTCGTAGATCATCACAAGTATCTAGACCGATTTATCTCCGCCATAG 382
Query 343 ATTTCTCCCACAGTCAAGGAAACAATATTCTTCTTCTCGACGCCAACGTTAATCTTATAA 402
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 383 ATTTCTCCCACAGTCAAGGAAACAGTCTTCTTCTTCTCGACGCCAACGTTAGTCTTATAA 442
Query 403 TTAAGCACTCTCATTTCAAATTTATCCACGAAT--A-tgtgtgtgtgtgtgttgtgAATA 459
|||||||||||||||| |||||||||||||||| | | ||| |||||||||||| ||||
Sbjct 443 TTAAGCACTCTCATTTTAAATTTATCCACGAATTGAATATGTTTGTGTGTGTTGTAAATA 502
Query 460 TCCTAATAATCGGGTGTTTATGAAGTCCGAATAAGCCTAAAGGCACTGGTGTGATGTTTA 519
| |||||||| || |||||||||| | || |||||||||||||| | |||||||||
Sbjct 503 TTCTAATAATTGGATGTTTATGAA-T---AA---GCCTAAAGGCACTGCT-TGATGTTTA 554
Query 520 TATGAAATGGTTATTGAACAAATCATG 546
|||| ||||||||||||||||||||||
Sbjct 555 TATGGAATGGTTATTGAACAAATCATG 581
Score = 252 bits (136), Expect = 3e-66
Identities = 169/184 (92%), Gaps = 5/184 (3%)
Strand=Plus/Plus
Query 1 TCTGAAAGAAAACATGGAGGAGACGAGCGAGAGTCTTGCCT---GGTTAGAGAAATACGA 57
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 5 TCTGAAAGAAGACATGGAGGAGACGAGCGAGAGTCTTGCCTGCAGGTTAGAGAAATACAA 64
Query 58 ACTCAGAGAGACATCGACCATCGACACAGCGGTGAGTTATCAACGCCTGATGTTG-AGTT 116
||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||| | ||
Sbjct 65 ACTCATAGAGACATCGACCATCGACACAGCAGTGAGTTATCGACGCCTGATATTGGA-TT 123
Query 117 TTGACGAAGATTTGCTTTATAGGAGACGCGAGCTCGCAACCGCCTTTAATTCCTTCGTCT 176
||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 124 TTGACGAAGATTTGCTTAACAGGAGACGGGAGCTCGCAACTGCCTTTAATTCCTTCGTCT 183
Query 177 GGCC 180
||||
Sbjct 184 GGCC 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5