BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491551 Length=1556 Score E Sequences producing significant alignments: (Bits) Value AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein... 2176 0.0 AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein... 972 0.0 AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | ch... 82.4 1e-14 > AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein | chr4:15406439-15409000 REVERSE LENGTH=1540 Length=1540 Score = 2176 bits (1178), Expect = 0.0 Identities = 1429/1541 (93%), Gaps = 53/1541 (3%) Strand=Plus/Plus Query 19 ACAATCTGAATTTTGATCCCAAATCAAAACTTTCCtcttcttcttcttcttcttcttcCT 78 |||||||||| |||||||||||||||||| | | |||||||||||| ||||||| Sbjct 50 ACAATCTGAA-TTTGATCCCAAATCAAAA-------C-T-TTCTTCTTCTTCGTCTTCCT 99 Query 79 CTAATCAAGATTGTCTCCTACCAAAGGTCTTGCCTTTCTCCGGCCAGATATGTGAGAAAA 138 |||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||| Sbjct 100 CTAATCAAAACTGTCTCCTACCAAAGGTCTTTCCTTTCTCCAGCCAGATATGTGAGGAAA 159 Query 139 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTGAATTCTTCATATTCAAATCTT 198 ||||||||||||||||||||||||||||||||||||||| | | | | |||||||||| Sbjct 160 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTG-A--CGT--T-TTCAAATCTT 213 Query 199 GGTAAAGAGATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGC 258 | | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 214 -G-AGAGAGATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGC 271 Query 259 GAAAATGATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 318 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 GAAAATCATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 331 Query 319 GATGCGCATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGAT 378 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 332 GATGCTCATGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTTGGGTGTCTATGAT 391 Query 379 GGTCATGGAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTC 438 ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 392 GGTCATGGAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTT 451 Query 439 AGTAATGAGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATTTTTCAGA 498 ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 452 AGTGATGAGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGA 511 Query 499 ATGGATGAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAA 558 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 512 ATGGATGAGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAA 571 Query 559 ATCAATAAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAAC 618 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 572 ATCAATAAGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGT 631 Query 619 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGGCCT 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 632 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCT 691 Query 679 AATTCTGGTAGCACGGCATGCGTAGCTGTTATTAGAGACAAACAGCTATTTGTTGCAAAT 738 |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 692 AATTCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAAT 751 Query 739 GCAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGAT 798 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 752 GCAGGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGAT 811 Query 799 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 871 Query 859 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 872 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 931 Query 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCCAGTCCAGATGTAAACACT 978 ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||| Sbjct 932 CAGAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCTAGTCCAGATGTTAACACT 991 Query 979 GTTGAACTCTGCGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1038 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 GTTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1051 Query 1039 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1052 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1111 Query 1099 TCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACCGCAGGTGGTGAA 1158 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1112 TCGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTCAGGTGGTGAA 1171 Query 1159 GGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCTGTTCAGTCCACGGAA 1218 ||||||||||||||||||||||| ||||||| ||||||||| || | | || Sbjct 1172 GGCTGTGATAACATGACCATGATATTGGTTCGATTCAAGAA-CC----C--T--AC---- 1218 Query 1219 CCTACTCCATCAGAAACCGAACTAAAACTGGAACCAAGCCAGGCCGAAGCAAACCACGAT 1278 | | | |||||| ||||||||||||| ||| |||||||||| |||| |||||||||| Sbjct 1219 --T-C-C-ATCAGAGACCGAACTAAAACCAGAAGCAAGCCAGGCAGAAGGAAACCACGAT 1273 Query 1279 GAGCCGAGCTCATCAAACTAGCCCCATCCTCAGGAGGGTCACGGAAGATCCCATCTAGAT 1338 ||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| Sbjct 1274 GAGCCGAGCTCATCAAACTAGGCCCATCCTCAG-AG--TCACGGAAGATCCC-TCTAGAT 1329 Query 1339 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCACAACCTGAC 1398 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1330 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCTCAACCTGAC 1389 Query 1399 GTTTCTGGGGATTTCAGTAT-TCCACCATTTTCTCCGCGTGCAGACTTTTGTCTCACGAG 1457 ||| | |||||||||| || ||||||| ||||| |||||||||||||||||| ||| Sbjct 1390 GTT---G---ATTTCAGTATATC-ACCATTTCCTCCGTGTGCAGACTTTTGTCTCATGAG 1442 Query 1458 CTCCCATAATGCAGAA-GAAATAATTGATGTGAAAATGTTGTTGGCCTTAAA-GAACATA 1515 ||||||||||| |||| | |||||||| ||| |||||||||||||||||||| ||||||| Sbjct 1443 CTCCCATAATGTAGAAAGGAATAATTGGTGTAAAAATGTTGTTGGCCTTAAAAGAACATA 1502 Query 1516 TCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556 ||||||| ||||||||||||||||||||||||||||||| Sbjct 1503 TCATCAT---GTAAATAAACAAAACAATAAGACATTTACAC 1540 > AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein | chr2:10663240-10665964 REVERSE LENGTH=1517 Length=1517 Score = 972 bits (526), Expect = 0.0 Identities = 852/1009 (84%), Gaps = 24/1009 (2%) Strand=Plus/Plus Query 207 GATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGCGAAAATGA 266 |||||||| ||| |||||| |||| ||||| |||||||| ||||||||||| || ||||| Sbjct 172 GATGGGTACATACCTAAGTTCTCCGAAAACTGAAAAGTTATCAGAAGATGGTGAGAATGA 231 Query 267 TAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCGC 325 ||| ||||||| ||||||||| ||||||||||||||||| || | |||||||||| |||| Sbjct 232 TAAGCTCAGATTTGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGACGCGC 290 Query 326 ATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGATGGTCATG 385 ||||||||||||||||||| |||||||| || || || || ||||| |||||||| |||| Sbjct 291 ATGCTGCAATTCTTGATCTTGATGATAAGACATCGTTCTTCGGTGTGTATGATGGCCATG 350 Query 386 GAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTCAGTAATG 445 |||||||||| ||| |||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 351 GAGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 410 Query 446 AGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATT-TTTCAGAATGGAT 504 | || ||| | |||||||||| | ||| ||||||| || |||||| ||| ||||||||| Sbjct 411 AAGCGTATAAAACTGGAGACGTCGAAACATCTCTTCGAAGAGCATTCTTT-AGAATGGAT 469 Query 505 GAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAAATCAAT 564 || ||||||||||||||||||||||||||||||||||| ||||| || ||||| || || Sbjct 470 GACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTTGGCGACAAGATGAAC 529 Query 565 AAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAACGCTAAT 624 || || ||||| ||||||||||| |||||||||||||||||||||| || | | ||| Sbjct 530 AAATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACCAATAAC 589 Query 625 AAACCTGAT-GCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGG-CCTAAT 681 |||| ||| | |||| | | |||| || ||||||||||||||||| | ||| |||| Sbjct 590 CAACCCGATAG-TTGGCC-TCTTGAAGATGGTCCTCATTCTGATTTCAC-GGGACCTACC 646 Query 682 TCTGG-TAGCACGGCATGCGTAGCTGTTATTAGAGACAA-ACAGCTATTTGTTGCAAATG 739 || || | |||| || || |||||| |||||| ||| || | |||| ||||||||||||| Sbjct 647 TCGGGGT-GCACAGCGTGTGTAGCTCTTATTAAAGATAAGA-AGCTCTTTGTTGCAAATG 704 Query 740 CAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGATC 799 | ||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||| Sbjct 705 CCGGTGACTCACGTTGTGTGATATCAAGAAAGAGTCAGGCTTACAATCTTTCTAAAGATC 764 Query 800 ACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATG 859 |||| || |||||||||| ||| |||||||||||||||||||||||||||||||| || | Sbjct 765 ACAAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACG 824 Query 860 CAGGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAG 918 | ||| || ||||||||||||| ||||| | || |||| || ||||| ||||| |||||| Sbjct 825 CTGGGAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAGTTCAAG 883 Query 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCC-AGTCCAGATGTAAACAC 977 |||||||||||||| ||| |||||||||||| ||||| || | ||||||| ||||||| Sbjct 884 CAGAATAAGTTTTTACCATCTGAAAAGCAAATGGTTACTGCTGA-TCCAGATATAAACAC 942 Query 978 TGTTGAACTCTGCGATGATGATGA-TTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATT 1036 | |||| || || ||||||||||| |||| ||||| |||| ||||||||||| ||||||| Sbjct 943 TATTGACCTATGTGATGATGATGACTTTC-TTGTTGTTGCTTGCGATGGAATATGGGATT 1001 Query 1037 GCATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAAC 1096 | ||| ||||||| |||| |||||||| || |||||||| || || || || || |||| Sbjct 1002 GTATGTCAAGCCAGGAACTAGTTGATTTTATCCATGAACAGTTAAAATCTGAAACAAAAC 1061 Query 1097 TCTCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCA-A-ACACCGCAGGTGG 1154 | || ||||||||||| ||| | ||||||||| |||||||| | ||| || | ||| Sbjct 1062 TTTCAACAGTATGTGAAAAGGTTGTTGATAGATGTTTGGCTCCAGATACAGCG-AC-TGG 1119 Query 1155 TGAAGGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCT 1203 |||||| |||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1120 TGAAGGTTGTGATAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCT 1168 > AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406493 FORWARD LENGTH=3474 Length=3474 Score = 82.4 bits (44), Expect = 1e-14 Identities = 54/58 (93%), Gaps = 4/58 (7%) Strand=Plus/Minus Query 1500 GGCCTT-AAAGAACATATCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556 |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 3474 GGCCTTAAAAGAAC--AT-ATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 3420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76806833850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5