BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491556 Length=1496 Score E Sequences producing significant alignments: (Bits) Value AT4G31810.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 2073 0.0 > AT4G31810.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387120-15390396 REVERSE LENGTH=1581 Length=1581 Score = 2073 bits (1122), Expect = 0.0 Identities = 1311/1400 (94%), Gaps = 22/1400 (2%) Strand=Plus/Plus Query 1 GGAAATGATCTGACGGCTAGGAATCGCCGCCGG-----GCAT-A-A-CCAAAACCCAAAA 52 ||||||||||||||||||||||||| ||| ||| || | | | |||||||||||| Sbjct 1 GGAAATGATCTGACGGCTAGGAATCACCGGCGGCCATAGCTTGAGAGGCAAAACCCAAAA 60 Query 53 CCCTCGGAAACCCAGAGGCGTCTTCTCGACGGAGAGCGACAGAGTGAGAGAGAGATGCAA 112 ||||||||||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct 61 CCCTCGGAAACACAGAGGCGTCTTCTCGACGGAGAGCGAC--------AGAGATATGCAA 112 Query 113 ACAGTGAAAGCTTTGAGGAGAGTGACTAAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 113 ACAGTGAAAGCTTTGAGGAGAGTGAGTGAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172 Query 173 GGAAGAAGCTTTTCTGCTCTCCCAAACTATTCCGCAGCAGATGCTGATATCGAAGACCAG 232 |||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 173 GGAAGACGCTTTTCTGCTCTCCCAAACTATTCCGCATCAGATGCAGATTTCGAAGACCAG 232 Query 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCTATTCTCAATAGTCCC-TCTTCTCT 291 ||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| Sbjct 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCCATTCTCAATA-ACCCATCTTCTCT 291 Query 292 TAATGCTCTTTCTACGCCTATGGTAGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351 |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 292 CAATGCTCTTTCTGCGCCTATGGTTGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351 Query 352 GAATCCAGCTATTTCTTTTGTTTTGATGAAGGGTAGCGGCAAAACGTTCTGTTCTGGTGC 411 ||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 352 GAACCCAGCTATTTCCTTTGTTTTGATGAAGGGTAGCGGTAAAACTTTCTGCTCTGGTGC 411 Query 412 AGATGTCTTGCCTCTGTATCACTCGATCAATGAAGGAAATACTGAAGAAAGTAAACTCTT 471 |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 412 AGATGTCTTGTCTCTTTATCACTCGATCAATGAAGGAAATACTGAAGAATCTAAACTCTT 471 Query 472 TTTCGACAACTTGTACAAGTTTGTATACCTCCAAGGAACATATTTGAGACCAAATATAGC 531 |||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 472 TTTCGAGAACTTGTACAAGTTTGTATACCTCCAAGGAACGTATTTAAAACCAAATATAGC 531 Query 532 TATAATGGATGGTGTAACCATGGGTTGTGGTGGTGGAGTTTCAATTCCAGGGATGTTTCG 591 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 532 AATAATGGATGGTGTGACCATGGGTTGTGGTGGTGGAATTTCACTTCCAGGGATGTTTCG 591 Query 592 TGTGGCTACAGATAAGACTGTGTTGGCCCATCCAGAGGTTCAAATTGGTTTCCATCCTGA 651 ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 592 TGTGGCTACAGATAAAACTGTGTTGGCCCATCCAGAGGTCCAAATTGGTTTTCATCCTGA 651 Query 652 TGCCGGAGCTTCCTATTACCTTTCACGGCTTCCTGGCTATTTAGGGGAATACTTGGCTCT 711 ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 652 TGCAGGAGCTTCCTATTATCTTTCACGGCTTCCTGGTTATTTAGGGGAATACTTGGCTCT 711 Query 712 AACAGGGCAGAAGCTAAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771 ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AACGGGGCAGAAACTTAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771 Query 772 CTTAAACGCGAGACTTCCGTTGATCGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 772 CTTAAACGCGAGACTTCCGTTGATTGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831 Query 832 TGCCGTTATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 TGCTGTCATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891 Query 892 TGTACTGCACAAGATTGAGATGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 892 CGTACTGCACAAGATAGAGTTGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951 Query 952 CATTGAGGCTATGGAAAATGAGGCTGCTAATTCTTGCAATGAATGGTGCAAGAAAACTCT 1011 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 952 CATTGAAGCTATGGAAAATGAAGCTGCTAATTCGTGCAATGAATGGTGCAAGAAAACTCT 1011 Query 1012 CAAACAAATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 CAAACAGATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071 Query 1072 AGGTAGATTCCAAACCCTTGATCAGTGTCTCACACGTGAATACCGTATATCTATTTGTGG 1131 |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| Sbjct 1072 AGGTAGATTCCAAACCCTTGATCAATGTCTCACACATGAATACCGTATATCCATTTGTGG 1131 Query 1132 AGTCTCAAA-GACAGTCTCTGGCGACTTTTGCGAGGGTATACGAGCCCGTTTGGTGGACA 1190 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 1132 AGTCTCAAAAGT-AGTCTCTGGCGACTTTTGCGAGGGTATTCGAGCCCGTTTGGTAGATA 1190 Query 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTACAAGATGTGAGCAAAGACATGGTGG 1250 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTAGAAGATGTGAGCAAAGACATGGTGG 1250 Query 1251 ATTGCTACTTCTCGCCAGCCAT-AGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309 ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1251 ATTGCTACTTCACGCCAGCC-TCAGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309 Query 1310 ACAGCTCAACGAGAGCCTTACTTCTGAGGAAAAATCTACTGATGATACTCATTACTTGCA 1369 |||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||| Sbjct 1310 ACAGCTCAACGAGAGCCTTATTTTTGAGGAAAAACCTACTGATGACACTCATTACTTGCA 1369 Query 1370 ATAAAGAATTCCACCGGTCT 1389 |||||||||||||||| ||| Sbjct 1370 ATAAAGAATTCCACCGATCT 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73794801150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5