BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491556

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31810.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prot...  2073    0.0  


> AT4G31810.1 | Symbols:  | ATP-dependent caseinolytic (Clp) protease/crotonase 
family protein | chr4:15387120-15390396 REVERSE 
LENGTH=1581
Length=1581

 Score = 2073 bits (1122),  Expect = 0.0
 Identities = 1311/1400 (94%), Gaps = 22/1400 (2%)
 Strand=Plus/Plus

Query  1     GGAAATGATCTGACGGCTAGGAATCGCCGCCGG-----GCAT-A-A-CCAAAACCCAAAA  52
             ||||||||||||||||||||||||| ||| |||     || | | |  ||||||||||||
Sbjct  1     GGAAATGATCTGACGGCTAGGAATCACCGGCGGCCATAGCTTGAGAGGCAAAACCCAAAA  60

Query  53    CCCTCGGAAACCCAGAGGCGTCTTCTCGACGGAGAGCGACAGAGTGAGAGAGAGATGCAA  112
             ||||||||||| ||||||||||||||||||||||||||||        ||||| ||||||
Sbjct  61    CCCTCGGAAACACAGAGGCGTCTTCTCGACGGAGAGCGAC--------AGAGATATGCAA  112

Query  113   ACAGTGAAAGCTTTGAGGAGAGTGACTAAACCCTTACAATGGGTTCGGTCTGTTTCTTAT  172
             ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct  113   ACAGTGAAAGCTTTGAGGAGAGTGAGTGAACCCTTACAATGGGTTCGGTCTGTTTCTTAT  172

Query  173   GGAAGAAGCTTTTCTGCTCTCCCAAACTATTCCGCAGCAGATGCTGATATCGAAGACCAG  232
             |||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct  173   GGAAGACGCTTTTCTGCTCTCCCAAACTATTCCGCATCAGATGCAGATTTCGAAGACCAG  232

Query  233   GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCTATTCTCAATAGTCCC-TCTTCTCT  291
             ||||||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||
Sbjct  233   GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCCATTCTCAATA-ACCCATCTTCTCT  291

Query  292   TAATGCTCTTTCTACGCCTATGGTAGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA  351
              |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  292   CAATGCTCTTTCTGCGCCTATGGTTGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA  351

Query  352   GAATCCAGCTATTTCTTTTGTTTTGATGAAGGGTAGCGGCAAAACGTTCTGTTCTGGTGC  411
             ||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct  352   GAACCCAGCTATTTCCTTTGTTTTGATGAAGGGTAGCGGTAAAACTTTCTGCTCTGGTGC  411

Query  412   AGATGTCTTGCCTCTGTATCACTCGATCAATGAAGGAAATACTGAAGAAAGTAAACTCTT  471
             |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||
Sbjct  412   AGATGTCTTGTCTCTTTATCACTCGATCAATGAAGGAAATACTGAAGAATCTAAACTCTT  471

Query  472   TTTCGACAACTTGTACAAGTTTGTATACCTCCAAGGAACATATTTGAGACCAAATATAGC  531
             |||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct  472   TTTCGAGAACTTGTACAAGTTTGTATACCTCCAAGGAACGTATTTAAAACCAAATATAGC  531

Query  532   TATAATGGATGGTGTAACCATGGGTTGTGGTGGTGGAGTTTCAATTCCAGGGATGTTTCG  591
              |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  532   AATAATGGATGGTGTGACCATGGGTTGTGGTGGTGGAATTTCACTTCCAGGGATGTTTCG  591

Query  592   TGTGGCTACAGATAAGACTGTGTTGGCCCATCCAGAGGTTCAAATTGGTTTCCATCCTGA  651
             ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  592   TGTGGCTACAGATAAAACTGTGTTGGCCCATCCAGAGGTCCAAATTGGTTTTCATCCTGA  651

Query  652   TGCCGGAGCTTCCTATTACCTTTCACGGCTTCCTGGCTATTTAGGGGAATACTTGGCTCT  711
             ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  652   TGCAGGAGCTTCCTATTATCTTTCACGGCTTCCTGGTTATTTAGGGGAATACTTGGCTCT  711

Query  712   AACAGGGCAGAAGCTAAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG  771
             ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  712   AACGGGGCAGAAACTTAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG  771

Query  772   CTTAAACGCGAGACTTCCGTTGATCGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC  831
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  772   CTTAAACGCGAGACTTCCGTTGATTGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC  831

Query  832   TGCCGTTATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG  891
             ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  832   TGCTGTCATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG  891

Query  892   TGTACTGCACAAGATTGAGATGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT  951
              |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  892   CGTACTGCACAAGATAGAGTTGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT  951

Query  952   CATTGAGGCTATGGAAAATGAGGCTGCTAATTCTTGCAATGAATGGTGCAAGAAAACTCT  1011
             |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  952   CATTGAAGCTATGGAAAATGAAGCTGCTAATTCGTGCAATGAATGGTGCAAGAAAACTCT  1011

Query  1012  CAAACAAATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA  1071
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1012  CAAACAGATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA  1071

Query  1072  AGGTAGATTCCAAACCCTTGATCAGTGTCTCACACGTGAATACCGTATATCTATTTGTGG  1131
             |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct  1072  AGGTAGATTCCAAACCCTTGATCAATGTCTCACACATGAATACCGTATATCCATTTGTGG  1131

Query  1132  AGTCTCAAA-GACAGTCTCTGGCGACTTTTGCGAGGGTATACGAGCCCGTTTGGTGGACA  1190
             ||||||||| |  ||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct  1132  AGTCTCAAAAGT-AGTCTCTGGCGACTTTTGCGAGGGTATTCGAGCCCGTTTGGTAGATA  1190

Query  1191  AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTACAAGATGTGAGCAAAGACATGGTGG  1250
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1191  AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTAGAAGATGTGAGCAAAGACATGGTGG  1250

Query  1251  ATTGCTACTTCTCGCCAGCCAT-AGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA  1309
             ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  1251  ATTGCTACTTCACGCCAGCC-TCAGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA  1309

Query  1310  ACAGCTCAACGAGAGCCTTACTTCTGAGGAAAAATCTACTGATGATACTCATTACTTGCA  1369
             |||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||
Sbjct  1310  ACAGCTCAACGAGAGCCTTATTTTTGAGGAAAAACCTACTGATGACACTCATTACTTGCA  1369

Query  1370  ATAAAGAATTCCACCGGTCT  1389
             |||||||||||||||| |||
Sbjct  1370  ATAAAGAATTCCACCGATCT  1389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73794801150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5