BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491603
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31390.1 | Symbols: | Protein kinase superfamily protein | ... 3620 0.0
> AT4G31390.1 | Symbols: | Protein kinase superfamily protein
| chr4:15233075-15237109 FORWARD LENGTH=2445
Length=2445
Score = 3620 bits (1960), Expect = 0.0
Identities = 2087/2150 (97%), Gaps = 1/2150 (0%)
Strand=Plus/Plus
Query 1 CATGGAGTCAATCCACTGCAATAGTTTAGTAACCCCTAATTTCTCCTTAAATCAGCGTCA 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 51 CATGGAGTCAATCCACTGCAATAGTTTACTAAACCCTAATTTCTCCTTAAACCAGCGTCG 110
Query 61 TCGGAGAATAAATCGCGCTGTTCTTGATCGGAGAGATGCTCTTTTGCGATCTCTCAACGC 120
|||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 111 TCGGAGGATTAATCACGCTGTTCTTAATCGGAGAGATGCTCTTTTGCGATCCCTCAACGC 170
Query 121 CGTGGAGTTGCGGCGGAGAAGGACCTGCTCGGCTGTACGGACCTCTAATTTTTCAGTTAC 180
|||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||||||
Sbjct 171 CGTGGAGTTGCGGCGGAGCAGGACGTTCTCGGCTGTACGGACTTCTAATTTCTCAGTTAC 230
Query 181 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCTTCGGTAATGACAACGGC 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCATCGGTAATGACAACGGC 290
Query 241 GATGAGCGGGGTGGAGAGAGGTATTCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 300
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 291 GATGAGCGGGGTGGAGAGAGGTGTGCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 350
Query 301 GGATATCGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGATATTGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 410
Query 361 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTCTCTCTTGTTTCAAGGGGTGTGGAGATTGT 420
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 411 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTGTCTCTAGTTTCAAGGGGTGTGGAGATTGT 470
Query 421 TTGGACTCTTGGGTTGTATTGGTCTACCTTAATGTATGATTTTTTGGTTGGAAGGGACGA 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 471 TTGGACTCTTGGGTTGTATTGGTCTACCTTAACGTATGATTTTTTGGTTGGAAGGGATGA 530
Query 481 GGAAGTTGTCCCCTTTCGTGCTCGCCAGCTTAGGAACCTTTTGTGCAACTTGGGGCCTTC 540
|||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||
Sbjct 531 GGAAGTTGTCCCCTTTCGTGCTAGGCAGCTTAGGAACCTGTTGTGCAATTTGGGACCTTC 590
Query 541 ATTTATCAAAGCTGGACAAGTTCTGGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 591 ATTTATCAAAGCTGGACAAGTTCTCGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 650
Query 601 GAACGAGCTCTGCATTCTCCAAGATGATGTTCCTCCATTCCCCAACGAGGTTGCTTTCAA 660
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 651 GAACGAGCTCTGCATACTCCAAGATGATGTTCCTCCATTCCCAAACGAGGTTGCTTTCAA 710
Query 661 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGGCCATATTTAGCAAGATTTCTTCAGA 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 711 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGAACATATTTAGCAAGATTTCTTCACA 770
Query 721 AACAATAGCAGCTGCAAGCTTGGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 771 AACAATAGCAGCTGCAAGCTTAGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 830
Query 781 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCCATAATTTACCGGGATCTCTT 840
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCTATAATTTACCGGGATCTCTT 890
Query 841 TCTTTTCCGAACCCTCGCCTCATTCTTAAATGGCTTCAGTTTACAGAAACTGGGTTGCAA 900
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 891 TCTTTTCCGAACCCTCGCCTCCTTCTTAAATGGCTTCAGTCTACAGAAACTGGGTTGCAA 950
Query 901 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTCTGGAGGAGCTTGACTACACCTT 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 951 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTTTGGAGGAGCTTGACTACACCTT 1010
Query 961 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1070
Query 1021 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1130
Query 1081 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCGGGGATTGATTTAAATGGATTCTT 1140
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1131 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCAGGGATTGATTTAAATGGATTCTT 1190
Query 1141 GACTGTTGGCGTAAGTGCTGCTTTAAGGCAGCTGTTAGAATTTGGATTGTTCCATGGAGA 1200
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1191 GACTGTTGGCGTAAGTGCTGCTCTAAGGCAGCTGTTGGAATTTGGATTGTTCCATGGAGA 1250
Query 1201 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATTGCTTATGTGGACTTCGG 1260
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1251 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATCGCTTATGTGGACTTCGG 1310
Query 1261 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1370
Query 1321 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1430
Query 1381 GGATACTGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1440
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GGATACCGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1490
Query 1441 GAAAGGACTTGCAGATTTCAATTTCCGTAGTGTTACAGGCCAATTTAACAAGCTTGTGTA 1500
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1491 GAAAGGACTTGCAGATTTCAATTTCCGAAGTGTTACAGGACAATTCAACAAGCTTGTGTA 1550
Query 1501 CGACTTTCCCATCCGTATCCCGGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACTCA 1560
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1551 CGACTTTCCCATCCGTATCCCAGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACGCA 1610
Query 1561 GGAGGGTATATGTTTCACGCTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1620
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GGAGGGTATATGTTTCACACTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1670
Query 1621 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1730
Query 1681 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTGGAAAACCTTTTATCACTTGCAAA 1740
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1731 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTAGAAAACCTTTTATCACTTGCAAA 1790
Query 1741 GGAAAACGTTGCCAAAATGAGTAGCAATCCTAATCTACGAGTTAAGCGTGTGGAGAGTAA 1800
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1791 GGAAAACGTCGCCAAGATGAGTAGCAATCCTAATCTACGAGTAAAGCGTGTGGAGAGTAA 1850
Query 1801 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1910
Query 1861 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1970
Query 1921 GGACGTATACAGATTGGTAGAAGACGAAGTAGATATTCCCACACTGGCCATGGAAGTCGT 1980
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1971 GGACGTATACAGATTGGTTGAAGACGAAGTAGATATTCCCACACTGGCCATGCAAGTCGT 2030
Query 1981 GCGAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCGGTGTTATC 2040
|| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2031 GCAAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCAGTATTATC 2090
Query 2041 AGACAGATGATGAATCGGCTTCTCACTTACtttttttGGCTCTTTTTGAAGAGGAAAGAG 2100
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 CGACAGATGATGAATCAGCTTCTCACTTACTTTTTTTGGCTCTTTTTGAAGAGGAAAGAG 2150
Query 2101 GTAA-ATATAGTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2149
|||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2151 GTAATATATATTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2200
Score = 159 bits (86), Expect = 8e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 2210 TTGGACGTTGTCTAATGTAGTTGGATATCT-AA-ACATTAGTGGACGTCATCAAATCAAA 2267
|||||||||||||| ||||||||||||||| || |||||| | |||||||||||||||||
Sbjct 2318 TTGGACGTTGTCTACTGTAGTTGGATATCTAAACACATTAATCGACGTCATCAAATCAAA 2377
Query 2268 GCTGTAATGTTCTCACAACACAACACTGATTCACAATCTGGACTCGAATGAATTG 2322
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2378 GTTGTAGTGTTCTCACAACACAAC--TGATTCACAATCTGGACTCGAATGAATTG 2430
Score = 76.8 bits (41), Expect = 9e-13
Identities = 46/48 (96%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 2150 TTATACACCAATCCATACATGTAATTATATAAAAAGCGCACACAAACT 2197
|||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2235 TTATACACCAATCCATACATGTAATTATATAAAA-GCACACACAAACT 2281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5