BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491679 Length=2345 Score E Sequences producing significant alignments: (Bits) Value AT4G30720.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 3611 0.0 > AT4G30720.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr4:14971906-14975519 REVERSE LENGTH=2488 Length=2488 Score = 3611 bits (1955), Expect = 0.0 Identities = 2104/2176 (97%), Gaps = 9/2176 (0%) Strand=Plus/Plus Query 1 CACAGAGACAAGCTTTTTAGTTTGAG----CTCTCACTATGTCTCTCTCGCAAACGAATT 56 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 21 CACAGAGACGAGCTTTTTAGTTTGAGCTCTCTCTCACTATGTCTCTCTCGCAAACGAATT 80 Query 57 TCCTCAGTTCTTCATTTCTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGAGG 116 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 81 TCCTCAGTTCTTCATTACTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGCGG 140 Query 117 TACTCTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCCAAGCGAACCGGGA 176 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 141 TACTTTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCGAAGCGAACCGGGA 200 Query 177 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCCA 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 201 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCTA 260 Query 237 AGGTTAAGAACAAGCTCGAAGGAGTATGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 296 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 261 AGGTTAAGAACAAGCTTGAAGGAGTTTGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 320 Query 297 ATGACCCTGGAAAGGATTTTCTCGGAATTTCCGAAGGTTTGCTTCAAGCCATCGCTAAAG 356 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 321 ATGACCCTGGAAAGGACTTTCTCGGGATTTCAGAAGGTTTGCTTCAAGCCATCGCTAAAG 380 Query 357 TTATTGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 416 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 TTATCGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 440 Query 417 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTGTATACTGTGGATTTGGATG 476 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 441 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTTTACACTGTGGATTTGGATG 500 Query 477 TGAAGACGCTTCTTGAGTTGGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTG 536 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 501 TGAAGACGCTCCTTGAGTTAGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTA 560 Query 537 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 620 Query 597 TGGTGAACGACTGTAAAAGGATCAACAGTGAGACATCATCCGGAGAACATGAACCTCAGA 656 ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 621 TGGTGAATGACTGTAAAAGGATCAACAGTGAGACAGCATCCGGAGAATATGAACCTCAGA 680 Query 657 TTATCAATGGCTCTGGAGATCCACACCAGC---GTGGAGGACGAAGCAAACCGAAAATCG 713 |||||||||||||||||||||||||||| | | ||||||||||||||||||||||| | Sbjct 681 TTATCAATGGCTCTGGAGATCCACACCATCATGGAGGAGGACGAAGCAAACCGAAAATTG 740 Query 714 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCAGCTCTTGTTCTTGCAGAGTTCGGTG 773 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 741 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCTGCTCTTGTACTTGCAGAGTTCGGTG 800 Query 774 CAGATGTGACATTGATAGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATCGGCG 833 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 801 CAGATGTGACATTGATTGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATAGGCG 860 Query 834 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 861 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 920 Query 894 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTT 953 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTC 980 Query 954 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGTGCTCCTGATAATATATTGGTCAACGGAA 1013 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 981 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGGGCTCCTGATAATATATTGGTCAACGGAA 1040 Query 1014 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1100 Query 1074 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1101 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1160 Query 1134 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAGACCAATTGCAGAGTACTTCCCAGA 1193 ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| Sbjct 1161 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAAACCAATTGCAGACTACCTCCCAGA 1220 Query 1194 ATTTAAAGTTTGATGCAGTTGTTCTTGCGGTTGGTCACTCAGCACGTGACACATATGAGA 1253 |||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1221 ATTTAAAGGTTGATGCAGTTGTTCTTGCAGTTGGTCATTCAGCACGTGACACATATGAGA 1280 Query 1254 TGCTTTATTCTCGTAATGTTGAATTGACCCCAAAAGATTTTGCTGTTGGTTTGCGCATTG 1313 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||| Sbjct 1281 TGCTTCATTCTCGTAATGTCGAATTGATTCCAAAAGATTTTGCTGTTGGTTTGCGTATTG 1340 Query 1314 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGC-AAGTGAAGTTCTT 1372 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1341 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGCTAA-TGAAGTTCTT 1399 Query 1373 AAAGGACGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1432 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1400 AAAGGGCGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1459 Query 1433 GCCGAGGATCTCTCGCAGTCTTCATCAAAACGTAGTTGCTACTCCTTCTGCATGTGTCCT 1492 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1460 ACCGAGGATCTCTCGCAGTCTTCATCGAAACGCAGTTGCTACTCCTTCTGCATGTGTCCT 1519 Query 1493 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1520 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1579 Query 1553 TTTTCTCGCCGTTCTTCCAAATGGGCCAATGCTGCACTCGTCGTCACAGTATCAGCAAAA 1612 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1580 TTTTCTCGCCGTTCATCCAAATGGGCCAATGCTGCACTCGTCGTTACAGTCTCAGCAAAA 1639 Query 1613 GACTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAGTTT 1672 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1640 GATTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAATTT 1699 Query 1673 GAAAGAAGAGCGGCTATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1732 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1700 GAAAGAAGAGCAGCCATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1759 Query 1733 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1760 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1819 Query 1793 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTACTCATATTACAGAGTCTCTGCGACAG 1852 ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| || Sbjct 1820 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTGCTCATATCACAGAGGCTCTGCGAGAG 1879 Query 1853 TCTATCTCTATGTTTGAAAAAGAGTTGCCAGGATTCATCTCAGAGGAAGCACTCCTCCAT 1912 |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 1880 TCTATCTCTATGTTTGAAAAGGAGTTACCGGGATTCATCTCAGAGGAAGCACTCCTCCAC 1939 Query 1913 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1940 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1999 Query 1973 AGCACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGCATT 2032 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2000 AGTACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGAATT 2059 Query 2033 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2060 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2119 Query 2093 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTGAAGTAC 2152 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2120 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTAAAGTAC 2179 Query 2153 TGATGATGATGATGAT 2168 |||||||| ||||||| Sbjct 2180 TGATGATGCTGATGAT 2195 Score = 198 bits (107), Expect = 2e-49 Identities = 162/186 (87%), Gaps = 13/186 (7%) Strand=Plus/Plus Query 2168 TTGTTGAGGTAAAAGAACATCAATGGGGACTGCTTCCTCCAGAATTCAGTTTTGTTGTAC 2227 |||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||||| Sbjct 2250 TTGTCGAGGTAAAAGAACATCAAGGGGGACTG----CTCCAAAATCCAGTTTTGTTGTAC 2305 Query 2228 CAAAGCTTAAGAACCTATACAGAAAAAGGCTC-AATCAGAAGC--G--GGAA-C--CATC 2279 || |||| ||| || ||||||| ||||||| | |||||||||| | |||| | |||| Sbjct 2306 CATAGCTCAAGGACTTATACAG-AAAAGGCCCAAATCAGAAGCGGGAAGGAATCGTCATC 2364 Query 2280 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTAGTTAAGA 2339 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2365 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTACTGAAGA 2424 Query 2340 AAGTAA 2345 |||||| Sbjct 2425 AAGTAA 2430 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116415063855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5