BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491684 Length=1044 Score E Sequences producing significant alignments: (Bits) Value AT4G30690.1 | Symbols: | Translation initiation factor 3 prote... 1511 0.0 > AT4G30690.1 | Symbols: | Translation initiation factor 3 protein | chr4:14960686-14962466 FORWARD LENGTH=1040 Length=1040 Score = 1511 bits (818), Expect = 0.0 Identities = 953/1014 (94%), Gaps = 25/1014 (2%) Strand=Plus/Plus Query 33 GAAGCAAATGGCTGGTATCACCATCACCGTCGGATTCAACGCCATTCTCGCCGGAGCCAC 92 ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 50 GAAGCAAATGGCTGGGATCACCAGCACCGTTGGATTCAACGCCATTCTCGCCGGAGCCAC 109 Query 93 CAAAACGGTGTCGCATCCTTCACCCTCTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 152 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 110 CAAAACGGTGTCGCA----T----C-CTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 160 Query 153 TCTGGCCGAATTGTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGCCCCGCCAT 212 | | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 161 TGTACCCGAATTCTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGTCCCGCCAT 220 Query 213 CACCTGCCGCTACGGAGGCGGTGGTGGCGGAGGAGGCGGAGGGTCTAGATTTCCCGGCGA 272 ||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| Sbjct 221 CACTTGCCGTTACGGAGGCGGTGGTGGC---GGAGGC------TCTAGATTTCCCGGCGA 271 Query 273 TAGGAGAGGTAGGCAAAAAGAATCCGAGGATGATGATGATTCGCTTGATATCTCAGCTAT 332 ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct 272 TAGGAGAGGTAGGCAGAAAGAATCCGA-G--GATGATGATTCGCTTGATATCTCAGCTAT 328 Query 333 TAGGTCACCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 392 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 TAGGTCAGCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 388 Query 393 AGACGAAGCGGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 452 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 AGAAGAAGCTGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 448 Query 453 TGCAGATCCTCCGGTTGTCAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 512 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 449 TGCAGATCCTCCGGTTGTTAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 508 Query 513 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGCATGGACTTGAAGGAGCTTAAAATGGG 572 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 509 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGAATGGACTTGAAGGAGCTTAAAATGGG 568 Query 573 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAATTCTTGCA 632 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 569 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAGTTCTTGCA 628 Query 633 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 692 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 688 Query 693 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTGCG-ACTGAGG 751 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 689 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTG-GTACTGAGG 747 Query 752 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTACCTTGGTGCCAAACAAAGAAGTTA 811 ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 748 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTGTCTTGGTGCCAAACAAGGAAGTTA 807 Query 812 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATGAAGTTT 871 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 808 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATAAAGTTT 867 Query 872 CAGCGGCAGGTATAACTGCAACGCAAGATACATGATGTGGAATTGTCTGATATCAAATGT 931 |||| ||| |||||||||||| ||||||| |||||| ||||||||||||| | |||||| Sbjct 868 CAGCAGCAAATATAACTGCAACACAAGATATATGATGCGGAATTGTCTGATGTAAAATGT 927 Query 932 TCAGGGAGTTTGATAAATTTCTGTATAGTTCCTTTTCTAATATGCTTCCTGCATTTCCTT 991 || | || |||||||||||||||||||||| ||||| ||||||||||| ||||||||| | Sbjct 928 TCTGTGACTTTGATAAATTTCTGTATAGTTTCTTTTTTAATATGCTTCTTGCATTTCCAT 987 Query 992 GTA-TCTGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1044 ||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 GTAAT-TGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1040 Score = 60.2 bits (32), Expect = 4e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32 |||||||||||||||||||||||||||||||| Sbjct 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51188595793 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5