BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491691 Length=2209 Score E Sequences producing significant alignments: (Bits) Value AT4G30600.1 | Symbols: | signal recognition particle receptor ... 3483 0.0 > AT4G30600.1 | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14937840-14941018 REVERSE LENGTH=2309 Length=2309 Score = 3483 bits (1886), Expect = 0.0 Identities = 2139/2252 (95%), Gaps = 53/2252 (2%) Strand=Plus/Plus Query 1 AGAAACGACAGGAACCAAGGGTAACGAACTTGGAGATCGAAGATGTTAGAACAGCTATTA 60 |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||| Sbjct 61 AGAAACGACAGGAACCAAGGGTTACGAAATTGAAGATCGAAGATGTTAGAACAGCTTTTA 120 Query 61 ATCTTTACCCGAGGAGGATTAATCCTTTGGACATGCAAAGAGATTGGTAATGCTTTGAAA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 121 ATCTTTACCCGAGGAGGATTAATCCTTTGGACATGCAAAGAGATTGGTAATGCATTAAAA 180 Query 121 GGATCACCCATCGACACTTTGATCCGGTCTTGTCTCCTTGAGGAACGATCTGGTGCTGTT 180 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 GGATCACCTATCGATACTTTGATCCGGTCCTGTCTCCTTGAGGAACGATCTGGTGCTGTT 240 Query 181 TCGTTTAACTACGATGCTCCTGGTGCTGCCTACACTCTCAAGTGGACGTTTCACAATGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCGTTTAACTACGATGCTCCTGGTGCTGCCTACACTCTCAAGTGGACGTTTCACAATGAT 300 Query 241 CTTGGACTTGTCTTTGTCGCTGTTTATCAGCGGATTCTCCACTTGCTTTATGTCGATGAT 300 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 301 CTTGGACTTGTCTTTGTCGCTGTTTATCAGCGGATTCTCCATTTGCTTTATGTGGATGAT 360 Query 301 TTGCTTTCTATGGTCAAGCAAAGCTTCTCTGAGATCTATGATCCTAAACGGATGGCTTAT 360 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 TTGCTTTCTATGGTCAAGCAAAGCTTCTCTGAGGTCTATGATCCTAAACGGATGGCTTAT 420 Query 361 GATGATTTCGATGAGACTTTTAGGCAGCTTAGGATTGAAGCTGAAGCTCGTGCTGAGGAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATGATTTCGATGAGACTTTTAGGCAGCTTAGGATTGAAGCTGAAGCTCGTGCTGAGGAA 480 Query 421 TTGAGGAAGACTAAGCAAGTTGGAAAGCCTGTGAGCAGTGTTAAGAAGCAAGGGCAGGTC 480 |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 481 TTGAGGAAGACTAAGCAAGTGGGGAAGCCTGTGACCAGTGTTAAGAAGCAAGGGCAGGTT 540 Query 481 TCAAAACCTGGACTTGAAGGAGGAAACAAAAGGG-T--TAGTGAAGGTGGCTCGAAGAAA 537 |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 541 TCAAAACCTGGACTTGAAGGAGGAAACAAAAGGGTTAGTAGTGAAGGTGGTTCGAAGAAA 600 Query 538 GATGAT-G-G-TGATGGTAATAAGGCCAAAGTTAGTACCTTGACTAATGGTCATTCTAAT 594 |||||| | | || |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 601 GATGATGGCGATGGTGGTAATAAGGCCAAAGTTAGTACCTTGACTAATGGTCATTCCAAT 660 Query 595 GGGAATCATCAAATGGAAGATGATTCTCAGGAGAC---TGATCTTGCTAACGGGAAAGAA 651 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 661 GGGAATCATCAAATGGAAGATGATTCTCAGGAGACTAATGATCTTGCTAACGGGAAAGAA 720 Query 652 AACACGAGTTCTAATGTTGCTGTTGATTTAAGTAAACTTCAGAAACTAAGAAGTAAAGGA 711 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 721 AACACGAGTTCTAATGTTGCTGTTGATTTAAGTAAACTTCAGAAACTTAGAAGTAAAGGA 780 Query 712 GTAAGAGGTAGAGGAGGTGTAAGGAAAACTGACAGTATAGGTAATAAGAGTTCCAAGGTT 771 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 781 GTCAGAGGTAGAGGAGGTGTAAGGAAAACTGACAGTATAGGTAATAAGAGTTCCAA-G-- 837 Query 772 GCTGCTGCGGAGCCAGCCAAAAAGGCGACAAAGAAAAATAGGGTTTGGGATGATGCGGCT 831 | | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 838 G-T--AGCGGAACCAGCCAAAAAGGCGACAAAGAAAAACAGGGTTTGGGATGATGCGGCT 894 Query 832 CCCAAACAATCGAAATTGGACTTCACGGATTCCATCGATGAAAATGGGAACAATGATCAT 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 CCCAAACAATCGAAATTGGACTTCACGGATTCCATCGATGAAAATGGGAACAATGATCAT 954 Query 892 GTAGATATTGTGGCTGCTGACCAAGGAGAAAGTATGATGGACAAGGAAGAGGTTTTCAGC 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 GTAGATATTGTGGCTGCTGACCAAGGAGAAAGTATGATGGACAAGGAAGAGGTTTTCAGC 1014 Query 952 AGTGATAGTGAAAGTGAAGATGATGACGAACCAGGAAGTGATGAGAAGCCTGCTGAGGCT 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1015 AGTGATAGTGAAAGTGAAGATGATGACGAACCAGGAAGTGATGAGAAGCCTGCTCAGGCT 1074 Query 1012 AAGAAAAAGGGATGGTTTTCTTCTGTTTTCCAGAGTATTACTGGGAAAGCGAATCTTGAA 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 AAGAAAAAGGGATGGTTTTCTTCTGTTTTCCAGAGTATTACTGGGAAAGCGAATCTTGAA 1134 Query 1072 AGGACAGACCTTGGACCGGCATTGAAAGCTCTGAAGGAACGGCTCATGACCAAGAATGTG 1131 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1135 AGGACAGACCTTGGACCGGCGTTGAAAGCTCTGAAGGAACGGCTCATGACCAAGAATGTG 1194 Query 1132 GTTGAAGAGATTGCTGAGAAGCTTTGTGAATCAGTGGAAGCTAGTCTTGAAGGAAAGAAG 1191 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1195 GCAGAAGAGATTGCTGAGAAGCTTTGCGAATCAGTGGAAGCTAGTCTTGAAGGAAAGAAA 1254 Query 1192 TTGTCATCGTTCACCAGGATCTCTTCAACCGTTCAGGCAGCGATGGAGGATGCTCTGGTT 1251 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TTGTCATCTTTCACCAGGATCTCTTCAACCGTTCAGGCAGCGATGGAGGATGCTCTGGTT 1314 Query 1252 CGTATATTGACTCCGAGACGCTCCATTGACATATTGAGAGATGTTCATGCTGCCAAAGAA 1311 |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1315 CGTATATTGACTCCAAGACGCTCCATTGATATATTAAGAGATGTTCATGCTGCCAAAGAA 1374 Query 1312 CAGAGGAAACCTTATGTGGTTGTGTTTGTTGGAGTCAATGGAGTTGGGAAATCCACCAAT 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 CAGAGGAAACCTTATGTGGTTGTGTTTGTTGGAGTCAATGGAGTTGGGAAATCCACCAAT 1434 Query 1372 CTGGCCAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGATGGCTGCTTGT 1431 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 CTCGCTAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGATGGCTGCTTGT 1494 Query 1432 GACACATTCCGTTCTGGAGCTGTTGAGCAGTTACGGACTCATGCTCGTAGGTTACAGATA 1491 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 GACACTTTCCGTTCTGGAGCTGTTGAGCAGTTACGGACTCATGCTCGTAGGTTACAGATA 1554 Query 1492 CCGATATTTGAAAAAGGCTATGAAAAGGATCCAGCTGTAGTTGCTAAAGAAGCCATACAA 1551 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1555 CCGATATTTGAAAAGGGTTATGAAAAGGATCCAGCAGTAGTTGCTAAAGAAGCCATACAA 1614 Query 1552 GAAGCAACTCGAAATGGATCCGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGAT 1611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 GAAGCAACTCGAAATGGATCCGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGAT 1674 Query 1612 AATGAACCTTTGATGAGAGCACTCTCAAAGCTCATCAACCTTAATCAGCCAGACTTAGTC 1671 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1675 AATGAACCTTTGATGAGAGCACTCTCAAAGCTCATCAACCTTAATCAGCCGGACTTGGTC 1734 Query 1672 TTGTTTGTTGGGGAAGCTCTTGTTGGAAACGATGCAGTAGACCAGCTCTCAAAGTTTAAT 1731 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1735 TTGTTTGTTGGTGAAGCTCTTGTTGGAAACGATGCAGTAGACCAGCTCTCGAAGTTCAAT 1794 Query 1732 CAGAAACTTTCGGATCTCTCGACTTCTGGGAACCCAAGACTGATCGATGGAATCTTACTG 1791 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1795 CAGAAACTTTCGGATCTCTCGACTTCTGGGAACCCAAGACTGATCGATGGAATCTTACTT 1854 Query 1792 ACAAAGTTTGATACCATTGACGACAAGGTTGGAGCAGCGTTATCTATGGTTTACATATCG 1851 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1855 ACAAAGTTTGATACCATTGACGACAAGGTCGGAGCAGCGTTGTCTATGGTTTACATATCG 1914 Query 1852 GGATCACCGGTTATGTTCGTGGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTTAAT 1911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1915 GGATCACCGGTTATGTTCGTGGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTTAAT 1974 Query 1912 GTCAAAGCCATAGTGAAGACACTTCTCAAGTGATCTCCTGTtcatcatcatcatcatca- 1970 |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1975 GTCAAAGCCATAGTCAAGACACTTCTCAAGTGATCTCCTCTTCATCATCATCATCATCAC 2034 Query 1971 tcatcatcatTACCATCTACTATCAACAATCAATG-Ct----------g-t-t-gttttt 2016 | ||||||||||||||||||||||||||||||||| || | | | |||||| Sbjct 2035 T-ATCATCATTACCATCTACTATCAACAATCAATGTCTTATCCATCATGCTGTTGTTTTT 2093 Query 2017 ggtttttgatttgaagacgatttctctttggaagtgttgtgttttctttAAAACTCAAAA 2076 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2094 GGTTTTTTATTTGAAGACGGTTTCTCTTTGGAAGTGTTGTGTTTTCTTTAAAACTCAAAA 2153 Query 2077 GACTGGAGTCTCAAAAA-TACCATCCCATGAC---A-A-----C----T---TTT-GTTT 2118 |||||||||| |||||| |||||||||||||| | | | | ||| |||| Sbjct 2154 GACTGGAGTCGCAAAAAATACCATCCCATGACTTTATATGATGCAACGTAACTTTTGTTT 2213 Query 2119 TGAATTAAAAGACTAATAATCATGTGAAATCGTGGCAttttttgtttt-tt-ttttAAA- 2175 | ||||||| || ||||||||||||||||| ||| ||| |||| |||| || ||||||| Sbjct 2214 TAAATTAAA-GATTAATAATCATGTGAAATAGTGTCATCTTTTATTTTGTTATTTTAAAT 2272 Query 2176 AATTATAACCAAATGAAGATTGAAGTTAGCAT 2207 |||||||||||||||||||||||| ||||||| Sbjct 2273 AATTATAACCAAATGAAGATTGAATTTAGCAT 2304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109587789735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5