BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491706
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30460.1 | Symbols: | glycine-rich protein | chr4:14888980-... 1214 0.0
> AT4G30460.1 | Symbols: | glycine-rich protein | chr4:14888980-14889802
REVERSE LENGTH=823
Length=823
Score = 1214 bits (657), Expect = 0.0
Identities = 757/804 (94%), Gaps = 12/804 (1%)
Strand=Plus/Plus
Query 1 ATTCATCAAGAGCACTGCAAAAGCACTCTAAATTGGGGGGaaaaaaaGCATTACCAAACA 60
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATTCATCAAGAGCACTGCAAAAGCACTCTAAATTGGGGTG--AAAAAGCATTACCAAACA 58
Query 61 CCAAATAAATATGTC---TCTGAGTAACTTTTCATCACTCATTCTAATAACTTTGATATT 117
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 59 CCAAATAAATATGTCTGATCTGAATAACTCATCATCACTCATTCTAATAACTTTGATTTT 118
Query 118 GGCCACATCAGCCCTAGTCTCCGAGAGCCGGGTCGCAAGAAAAGACTTGGGTTTGGACCT 177
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGCCACATCAGTTCTAGTCTCCGAGAGCCGGGTCGCAAGAAAAGACTTGGGTTTGGACCT 178
Query 178 TGGCGGGATAGG-GATCGGTGCT-GGTATTGGCATAGGTATCGGTGGAGGTGGATCCGGA 235
||| ||||| || | | ||| | || || ||||||||||||||||||||||||||||||
Sbjct 179 TGGAGGGATCGGTGCT-GGT-ATAGGCATAGGCATAGGTATCGGTGGAGGTGGATCCGGA 236
Query 236 TCCGGAGCTGGTGCCGGGTCTGGATCCGGAGGAGGAGGGTCAAGCTCTTCTTCCTCATCT 295
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 TCCGGAGCTGGTGCCGGGTCTGGATCCGGAGGAGGAGGATCAAGCTCTTCTTCCTCATCT 296
Query 296 AGCTCTAGTTCTTCTTCCAGCTCCGGTGGTGGAGGAGGTGATGCAGGATCCGAAGCTGGA 355
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 297 AGCTCTAGTTCTTCTTCTAGCTCCGGTGGTGGTGGAGGTGATGCAGGATCCGAAGCTGGA 356
Query 356 TCCTACGCCGGATCACGTGCCGGCTCTGGTTCGGGAGGACGTTCTGGGTCAGGCCGCgga 415
|| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 357 TCATACGCCGGATCACATGCCGGGTCTGGTTCGGGAGGACGTTCCGGGTCAGGCCGTGGA 416
Query 416 agaggaagtggaggaggagggggtcacggtggaggaggtggaggaggagggggtagaggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGAGGAAGTGGAGGAGGAGGGGGTCACGGTGGAGGAGGTGGAGGAGGAGGGGGTAGAGGT 476
Query 476 ggaggaggtggatccggtaacggaggagggtacggtgAAGGCGGTGGATATGGTGGAGGA 535
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 477 GGAGGAGGTGGATCCGGTAACGGAGAAGGATACGGTGAAGGCGGTGGATATGGTGGAGGA 536
Query 536 TATGGTGGTGGCGACGACTGAATGAAGAATATTGCATGCATGCAATATTGTGTTTTATAC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TATGGTGGTGGCGACGACTGAATGAAGAATATTGCATGCATGCAATATTGTGTTTTATAC 596
Query 596 GTCATTATATGATGTTATTAGTATATaaaaaaaTAAAATGCTAGAAAAGTAAATTTTCTA 655
|| ||||||| ||||||||||||| | |||||||||||||| |||||||||| ||||||
Sbjct 597 GTAATTATATTATGTTATTAGTATG-AGAAAAATAAAATGCTTGAAAAGTAAACTTTCTA 655
Query 656 AAGTGTGTGAGTAAAGGAGATGGAAAAGGATGAATTCTAATGTGTTTGGTTACTTA-TTA 714
||||||||||||| |||||||||||||||| |||||||||||||||||||| | || |||
Sbjct 656 AAGTGTGTGAGTACAGGAGATGGAAAAGGAGGAATTCTAATGTGTTTGGTT-CGTAATTA 714
Query 715 TATACTCTTCCATATTCGAATTGGATTCTTGGTGTTGTATTTGTTTTACATTTGTACTAT 774
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 715 TATACCCTTCCATATTCGAATTGGATTCTTGGTGTTGTATATGTTTTACTTTTGTACTAT 774
Query 775 AAGTTGTAATTTCCCAATTTAAAT 798
||||||||||||||||||||||||
Sbjct 775 AAGTTGTAATTTCCCAATTTAAAT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5